RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 SLC25A21Q9BQT8 299 aaPredicted RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 MRIQ9BWK5 157 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 FAIM2Q9BWQ8 316 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 GATA5Q9BWX5 397 aaPredicted RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 SPANXDQ9BXN6 97 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 QTRT1Q9BXR0 403 aaKnown RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 TMEM126AQ9H061 195 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 KLK15Q9H2R5 256 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 TBC1D17Q9HA65 648 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 LTB4R2Q9NPC1 389 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 OBP2BQ9NPH6 170 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 SLC52A3Q9NQ40 469 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 TM7SF3Q9NS93 570 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 SERTAD4Q9NUC0 356 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 FKBP11Q9NYL4 201 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 FARSAQ9Y285 508 aaKnown RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 COQ4Q9Y3A0 265 aa4.81□□□□□ -1.64
CD44-236ENST00000533222 COL1A1P02452 1464 aaPredicted RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 SIPA1L3O60292 1781 aaPredicted RBP4.81□□□□□ -1.64
CD44-236ENST00000533222 LOC105369274A0A096LPK9 316 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 A0A0G2JN53 185 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 A0A1W2PRS3 328 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 TMEM129A0AVI4 362 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 H0Y980 276 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 KIR2DS3K7RE56 304 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 GNGT2O14610 69 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 SIVA1O15304 175 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 XRCC3O43542 346 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 CSO75390 466 aaKnown RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 SCGNO76038 276 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 CDRT1O95170 752 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 PTHP01270 115 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 IFNA1P01562 189 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 ALDOAP04075 364 aaKnown RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 ISG15P05161 165 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 TRGC1P0CF51 173 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 HOXB9P17482 250 aaPredicted RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 FBLP22087 321 aaKnown RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 HIST1H1TP22492 207 aaPredicted RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 GABRA3P34903 492 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 BSGP35613 385 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 TIRAPP58753 221 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 TAS2R41P59536 307 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 PLP1P60201 277 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 RPS23P62266 143 aaKnown RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 SNRPGP62308 76 aaKnown RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 RPS25P62851 125 aaKnown RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 CDK3Q00526 305 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 HMGCS1Q01581 520 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 SSBP1Q04837 148 aaKnown RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 ST3GAL4Q11206 333 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 DHRS2Q13268 280 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 KLF9Q13886 244 aaPredicted RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 MEF2DQ14814 521 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 KIR2DS3Q14952 304 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 ELOBQ15370 118 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 IL17AQ16552 155 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 LTC4SQ16873 150 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 ARHGAP11BQ3KRB8 267 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 PDZD11Q5EBL8 140 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 TFDP3Q5H9I0 405 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 TPTE2P1Q5T6R2 138 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 ZNF776Q68DI1 518 aaPredicted RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 AADACL2Q6P093 401 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 GGT6Q6P531 493 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 DHRS11Q6UWP2 260 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 BTNL8Q6UX41 500 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 FOXI2Q6ZQN5 318 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 ZCCHC23Q6ZST2 131 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 Q6ZWC4 215 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 GTF2H5Q6ZYL4 71 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 SIAH3Q8IW03 269 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 UEVLDQ8IX04 471 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 OR4N4Q8N0Y3 316 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 SLC39A11Q8N1S5 342 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 SYS1Q8N2H4 156 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 OR10G4Q8NGN3 311 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 OR6K2Q8NGY2 324 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 MARCH1Q8TCQ1 289 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 ZNF418Q8TF45 676 aaPredicted RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 STYXQ8WUJ0 223 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 EMG1Q92979 244 aaKnown RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 PIGTQ969N2 578 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 IGSF8Q969P0 613 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 FAM131CQ96AQ9 280 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 LRRC3BQ96PB8 259 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 ATF6BQ99941 703 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 PYGO2Q9BRQ0 406 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 CABLES2Q9BTV7 478 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 ZNF471Q9BX82 626 aaPredicted RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 SLC39A8Q9C0K1 460 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 CTDSP1Q9GZU7 261 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 SPATC1LQ9H0A9 340 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 ATG5Q9H1Y0 275 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 UBE2ZQ9H832 354 aaPredicted RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 SRD5A3Q9H8P0 318 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 A4GALTQ9NPC4 353 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 HINT3Q9NQE9 182 aaKnown RBP4.8□□□□□ -1.64
CD44-236ENST00000533222 ASF1BQ9NVP2 202 aa4.8□□□□□ -1.64
CD44-236ENST00000533222 NECAP2Q9NVZ3 263 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms