RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 NXPH2O95156 264 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 PRDX2P32119 198 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 HAAOP46952 286 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 LY6EQ16553 131 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 CLVS2Q5SYC1 327 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 SLC35E4Q6ICL7 350 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 ZNF322Q6U7Q0 402 aaPredicted RBP12.04□□□□□ -0.48
VPS28-215ENST00000531924 Q6ZTK2 550 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 ASRGL1Q7L266 308 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 ZNF561Q8N587 486 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 POC1AQ8NBT0 407 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 OR4C13Q8NGP0 309 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 MOB1AQ9H8S9 216 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 RAB18Q9NP72 206 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 NUFIP1Q9UHK0 495 aaKnown RBP12.04□□□□□ -0.48
VPS28-215ENST00000531924 ZNF222Q9UK12 451 aa12.04□□□□□ -0.48
VPS28-215ENST00000531924 ZNF670-ZNF695F2Z2N8 137 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 J3QT63 122 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 CSF1P09603 554 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 PTGES3Q15185 160 aaKnown RBP12.03□□□□□ -0.48
VPS28-215ENST00000531924 LRRC75BQ2VPJ9 315 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 ACP7Q6ZNF0 438 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 MEPCEQ7L2J0 689 aaKnown RBP12.03□□□□□ -0.48
VPS28-215ENST00000531924 KRT74Q7RTS7 529 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 DTX3Q8N9I9 347 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 OR2T27Q8NH04 317 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 PPP1R14AQ96A00 147 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 ZNF488Q96MN9 340 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 MNTQ99583 582 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 APOL4Q9BPW4 351 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 GPR173Q9NS66 373 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 KRT84Q9NSB2 600 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 C19orf12Q9NSK7 152 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 OR14J1Q9UGF5 321 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 OR52A1Q9UKL2 312 aa12.03□□□□□ -0.48
VPS28-215ENST00000531924 TCRBV3S1A0A5B6 114 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 CCDC182A6NF36 153 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 DLGAP1O14490 977 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 PRKYO43930 277 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 TSPAN15O95858 294 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 COX7A1P24310 79 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 CXCR4P61073 352 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 MFGE8Q08431 387 aaPredicted RBP12.02□□□□□ -0.49
VPS28-215ENST00000531924 C11orf88Q6PI97 169 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 SLC35F2Q8IXU6 374 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 MKXQ8IYA7 352 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 CD177Q8N6Q3 437 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 OR4M1Q8NGD0 313 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 OR5K1Q8NHB7 308 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 OR2T6Q8NHC8 308 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 RORBQ92753 470 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 PLEKHA1Q9HB21 404 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 USE1Q9NZ43 259 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 FBLN5Q9UBX5 448 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 COPS3Q9UNS2 423 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 SLC7A11Q9UPY5 501 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 POMPQ9Y244 141 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 SNX5Q9Y5X3 404 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 R4GMQ9 66 aa12.02□□□□□ -0.49
VPS28-215ENST00000531924 SYNGR1O43759 233 aa12.01□□□□□ -0.49
VPS28-215ENST00000531924 DNAJC8O75937 253 aaPredicted RBP12.01□□□□□ -0.49
VPS28-215ENST00000531924 TTRP02766 147 aa12.01□□□□□ -0.49
VPS28-215ENST00000531924 KRT8P05787 483 aa12.01□□□□□ -0.49
VPS28-215ENST00000531924 PGA5P0DJD9 388 aa12.01□□□□□ -0.49
VPS28-215ENST00000531924 DAPP51397 102 aa12.01□□□□□ -0.49
VPS28-215ENST00000531924 ERVFRD-1P60508 538 aa12.01□□□□□ -0.49
VPS28-215ENST00000531924 TMEM200BQ69YZ2 307 aa12.01□□□□□ -0.49
VPS28-215ENST00000531924 FAHD1Q6P587 224 aa12.01□□□□□ -0.49
VPS28-215ENST00000531924 ELMOD2Q8IZ81 293 aa12.01□□□□□ -0.49
VPS28-215ENST00000531924 TCEANCQ8N8B7 351 aa12.01□□□□□ -0.49
VPS28-215ENST00000531924 ADI1Q9BV57 179 aa12.01□□□□□ -0.49
VPS28-215ENST00000531924 TGP01266 2768 aa12□□□□□ -0.49
VPS28-215ENST00000531924 FAM230AA0A1W2PPH8 454 aa12□□□□□ -0.49
VPS28-215ENST00000531924 A6NIN4 97 aa12□□□□□ -0.49
VPS28-215ENST00000531924 PRR32B1ATL7 298 aa12□□□□□ -0.49
VPS28-215ENST00000531924 G3V2T6 193 aa12□□□□□ -0.49
VPS28-215ENST00000531924 NOS1APO75052 506 aaPredicted RBP12□□□□□ -0.49
VPS28-215ENST00000531924 RPP14O95059 124 aaKnown RBP12□□□□□ -0.49
VPS28-215ENST00000531924 IGLV3-1P01715 115 aa12□□□□□ -0.49
VPS28-215ENST00000531924 CEBPDP49716 269 aaPredicted RBP12□□□□□ -0.49
VPS28-215ENST00000531924 HERPUD1Q15011 391 aa12□□□□□ -0.49
VPS28-215ENST00000531924 AANATQ16613 207 aa12□□□□□ -0.49
VPS28-215ENST00000531924 NXNL2Q5VZ03 156 aa12□□□□□ -0.49
VPS28-215ENST00000531924 BCDIN3DQ7Z5W3 292 aaKnown RBP12□□□□□ -0.49
VPS28-215ENST00000531924 GID4Q8IVV7 300 aa12□□□□□ -0.49
VPS28-215ENST00000531924 BATF2Q8N1L9 274 aa12□□□□□ -0.49
VPS28-215ENST00000531924 YIPF7Q8N8F6 280 aa12□□□□□ -0.49
VPS28-215ENST00000531924 ASCC1Q8N9N2 400 aaKnown RBP12□□□□□ -0.49
VPS28-215ENST00000531924 TMEM163Q8TC26 289 aa12□□□□□ -0.49
VPS28-215ENST00000531924 C17orf50Q8WW18 174 aa12□□□□□ -0.49
VPS28-215ENST00000531924 IL4I1Q96RQ9 567 aa12□□□□□ -0.49
VPS28-215ENST00000531924 NPFFR1Q9GZQ6 430 aa12□□□□□ -0.49
VPS28-215ENST00000531924 MEGF9Q9H1U4 602 aa12□□□□□ -0.49
VPS28-215ENST00000531924 CLN6Q9NWW5 311 aa12□□□□□ -0.49
VPS28-215ENST00000531924 ENOPH1Q9UHY7 261 aa12□□□□□ -0.49
VPS28-215ENST00000531924 SIGLEC9Q9Y336 463 aa12□□□□□ -0.49
VPS28-215ENST00000531924 NOTCH1P46531 2555 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 PQLC2LA1A4F0 135 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 M0R129 80 aa11.99□□□□□ -0.49
VPS28-215ENST00000531924 MAGEB4O15481 346 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms