RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 CNOT1A5YKK6 2376 aaKnown RBP1.86□□□□□ -2.11
CD44-233ENST00000531141 RTL1A6NKG5 1358 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 SHANK1Q9Y566 2161 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 HECTD1Q9ULT8 2610 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 A0A075B6Q4 140 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 IGKV3D-11A0A0A0MRZ8 115 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 CTAGE15A4D2H0 777 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 SLC9A3R1O14745 358 aaPredicted RBP1.85□□□□□ -2.11
CD44-233ENST00000531141 NMT2O60551 498 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 RAD1O60671 282 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 GATBO75879 557 aaKnown RBP1.85□□□□□ -2.11
CD44-233ENST00000531141 LHBP01229 141 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 PGA5P0DJD9 388 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 UQCRFS1P47985 274 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 FABP6P51161 128 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 MERTKQ12866 999 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 TWF2Q6IBS0 349 aaKnown RBP1.85□□□□□ -2.11
CD44-233ENST00000531141 GUSBP11Q6P575 273 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 CTAGE6Q86UF2 777 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 BBS5Q8N3I7 341 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 UBAC2Q8NBM4 344 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 ENKURQ8TC29 256 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 TSEN15Q8WW01 171 aaKnown RBP1.85□□□□□ -2.11
CD44-233ENST00000531141 RPEQ96AT9 228 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 KCNS1Q96KK3 526 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 PRRC1Q96M27 445 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 GSDMAQ96QA5 445 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 PANX1Q96RD7 426 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 TMEM243Q9BU79 118 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 C1orf50Q9BV19 199 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 SLC7A5P2Q9GIP4 190 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 MRM3Q9HC36 420 aaKnown RBP1.85□□□□□ -2.11
CD44-233ENST00000531141 AGPAT4Q9NRZ5 378 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 GCNT4Q9P109 453 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 DHCR7Q9UBM7 475 aaKnown RBP1.85□□□□□ -2.11
CD44-233ENST00000531141 ITPR1Q14643 2758 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 SEC16AO15027 2179 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 LAMB1P07942 1786 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 FLT4P35916 1363 aa1.85□□□□□ -2.11
CD44-233ENST00000531141 EDC4Q6P2E9 1401 aaKnown RBP1.84□□□□□ -2.11
CD44-233ENST00000531141 MGAMO43451 1857 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 TENM4Q6N022 2769 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 LAMA5O15230 3695 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 SPTA1P02549 2419 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 VGLL3A8MV65 326 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 CCNB2O95067 398 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 MT-ND4P03905 459 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 ERCC1P07992 297 aaPredicted RBP1.84□□□□□ -2.11
CD44-233ENST00000531141 HSPD1P10809 573 aaKnown RBP1.84□□□□□ -2.11
CD44-233ENST00000531141 SFTPCP11686 197 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 CTRB1P17538 263 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 USF1P22415 310 aaPredicted RBP1.84□□□□□ -2.11
CD44-233ENST00000531141 MYL9P24844 172 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 PPICP45877 212 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 GDI2P50395 445 aaKnown RBP1.84□□□□□ -2.11
CD44-233ENST00000531141 RAB7AP51149 207 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 UBE2E1P51965 193 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 NDUFA8P51970 172 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 IFITM3Q01628 133 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 KDSRQ06136 332 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 IL15RAQ13261 267 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 ZNF829Q3KNS6 432 aaPredicted RBP1.84□□□□□ -2.11
CD44-233ENST00000531141 TMPRSS11AQ6ZMR5 421 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 C16orf47Q6ZP98 133 aaPredicted RBP1.84□□□□□ -2.11
CD44-233ENST00000531141 OTUD6BQ8N6M0 293 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 ZNF645Q8N7E2 425 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 TMEM104Q8NE00 496 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 OR10W1Q8NGF6 305 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 OR1P1Q8NH06 330 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 SGTBQ96EQ0 304 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 WDR34Q96EX3 536 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 ZBED3Q96IU2 234 aaPredicted RBP1.84□□□□□ -2.11
CD44-233ENST00000531141 TEAD3Q99594 435 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 BEX1Q9HBH7 125 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 ACP6Q9NPH0 428 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 RRAGDQ9NQL2 400 aaPredicted RBP1.84□□□□□ -2.11
CD44-233ENST00000531141 SIGLEC7Q9Y286 467 aa1.84□□□□□ -2.11
CD44-233ENST00000531141 LOC400499M0QZD8 3231 aa1.84□□□□□ -2.12
CD44-233ENST00000531141 MYO9AB2RTY4 2548 aa1.84□□□□□ -2.12
CD44-233ENST00000531141 WDFY3Q8IZQ1 3526 aa1.84□□□□□ -2.12
CD44-233ENST00000531141 LTBP2Q14767 1821 aa1.84□□□□□ -2.12
CD44-233ENST00000531141 IGSF10Q6WRI0 2623 aa1.84□□□□□ -2.12
CD44-233ENST00000531141 CEP295Q9C0D2 2601 aa1.84□□□□□ -2.12
CD44-233ENST00000531141 SDK2Q58EX2 2172 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 CFAP46Q8IYW2 2715 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 SPTAN1Q13813 2472 aaKnown RBP1.83□□□□□ -2.12
CD44-233ENST00000531141 DMXL2Q8TDJ6 3036 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 UBR5O95071 2799 aaPredicted RBP1.83□□□□□ -2.12
CD44-233ENST00000531141 A0A0G2JMZ2 1700 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 TSPAN11A1L157 253 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 SERPINB7O75635 380 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 CD160O95971 181 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 HLA-HP01893 362 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 CLTAP09496 248 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 PGA4P0DJD7 388 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 PGA3P0DJD8 388 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 CD70P32970 193 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 MPV17P39210 176 aa1.83□□□□□ -2.12
CD44-233ENST00000531141 IDH2P48735 452 aaKnown RBP1.83□□□□□ -2.12
CD44-233ENST00000531141 RAB9AP51151 201 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms