RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 SERPINA3P01011 423 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 AVPP01185 164 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 CDK1P06493 297 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 MUC1P15941 1255 aaPredicted RBP11.13□□□□□ -0.63
VPS28-210ENST00000529182 AMY2BP19961 511 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 GLRA1P23415 457 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 SOX2P48431 317 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 GNB2P62879 340 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 CNN3Q15417 329 aaKnown RBP11.13□□□□□ -0.63
VPS28-210ENST00000529182 CCDC58Q4VC31 144 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 DCAF12L2Q5VW00 463 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 WDR25Q64LD2 544 aaPredicted RBP11.13□□□□□ -0.63
VPS28-210ENST00000529182 UTS2BQ765I0 119 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 NLRC3Q7RTR2 1065 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 RNF144BQ7Z419 303 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 ZNF573Q86YE8 665 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 FGFRL1Q8N441 504 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 OR13C5Q8NGS8 318 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 OR13C9Q8NGT0 318 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 ZNF671Q8TAW3 534 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 RPS4Y2Q8TD47 263 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 HAVCR2Q8TDQ0 301 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 TSEN15Q8WW01 171 aaKnown RBP11.13□□□□□ -0.63
VPS28-210ENST00000529182 BORCS8Q96FH0 119 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 SMURF1Q9HCE7 757 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 TRIM36Q9NQ86 728 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 SCN3BQ9NY72 215 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 DNAJB11Q9UBS4 358 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 CLN8Q9UBY8 286 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 RAB26Q9ULW5 256 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 DHDHQ9UQ10 334 aa11.13□□□□□ -0.63
VPS28-210ENST00000529182 TMPRSS2O15393 492 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 ATF1P18846 271 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 AZGP1P25311 298 aaKnown RBP11.12□□□□□ -0.63
VPS28-210ENST00000529182 FUT6P51993 359 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 WNT4P56705 351 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 SLC35A2P78381 396 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 STUMQ69YW2 141 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 C1orf229Q6ZS94 237 aaPredicted RBP11.12□□□□□ -0.63
VPS28-210ENST00000529182 FAM216BQ8N7L0 139 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 NANOGP1Q8N7R0 232 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 POC1AQ8NBT0 407 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 GHSRQ92847 366 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 MYDGFQ969H8 173 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 SMIM19Q96E16 107 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 TECTBQ96PL2 329 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 SPACA5Q96QH8 159 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 TMPRSS13Q9BYE2 586 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 NLKQ9UBE8 527 aa11.12□□□□□ -0.63
VPS28-210ENST00000529182 POLR3KQ9Y2Y1 108 aaPredicted RBP11.12□□□□□ -0.63
VPS28-210ENST00000529182 LOC105371242A0A075B767 164 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 A0A0G2JMP0 313 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 A0A0X1KG70 313 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 DVL1O14640 695 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 NDUFA2O43678 99 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 MT-ND2P03891 347 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 PGA5P0DJD9 388 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 SELLP14151 372 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 HNF1AP20823 631 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 PCMT1P22061 227 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 MPZP25189 248 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 PAX2Q02962 417 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 IKZF1Q13422 519 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 DMKNQ6E0U4 476 aaPredicted RBP11.11□□□□□ -0.63
VPS28-210ENST00000529182 OR4M2Q8NGB6 313 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 GPR148Q8TDV2 347 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 SLAMF9Q96A28 289 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 RFT1Q96AA3 541 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 TMIGD2Q96BF3 282 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 C12orf43Q96C57 262 aaKnown RBP11.11□□□□□ -0.63
VPS28-210ENST00000529182 ORAI1Q96D31 301 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 PGLYRP3Q96LB9 341 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 ZNF184Q99676 751 aaPredicted RBP11.11□□□□□ -0.63
VPS28-210ENST00000529182 PKIBQ9C010 78 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 DUSP21Q9H596 190 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 C7orf69Q9H7B7 122 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 KAAG1Q9UBP8 84 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 LPAR3Q9UBY5 353 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 OR5V1Q9UGF6 321 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 ERGIC3Q9Y282 383 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 ZNF281Q9Y2X9 895 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 TPRKBQ9Y3C4 175 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 INSIG2Q9Y5U4 225 aa11.11□□□□□ -0.63
VPS28-210ENST00000529182 IGKV1D-17A0A075B6S4 117 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 PPIAL4CA0A0B4J2A2 164 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 OR2AT4A6NND4 320 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 C22orf46C9J442 243 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 F8VVB4 439 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 F8VWA3 439 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 SPRY1O43609 319 aaPredicted RBP11.1□□□□□ -0.63
VPS28-210ENST00000529182 NOS1APO75052 506 aaPredicted RBP11.1□□□□□ -0.63
VPS28-210ENST00000529182 RPSAP08865 295 aaKnown RBP11.1□□□□□ -0.63
VPS28-210ENST00000529182 OCM2P0CE71 109 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 OCMP0CE72 109 aaPredicted RBP11.1□□□□□ -0.63
VPS28-210ENST00000529182 PSG2P11465 335 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 ADRA2CP18825 462 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 PRKACBP22694 351 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 CPT2P23786 658 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 CRHBPP24387 322 aa11.1□□□□□ -0.63
VPS28-210ENST00000529182 SRP14P37108 136 aaKnown RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms