RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 TIMM10BQ9Y5J6 103 aa18.5■□□□□ 0.55
VPS28-205ENST00000526204 CD79AP11912 226 aa18.5■□□□□ 0.55
VPS28-205ENST00000526204 DTYMKP23919 212 aa18.5■□□□□ 0.55
VPS28-205ENST00000526204 PCBD1P61457 104 aa18.5■□□□□ 0.55
VPS28-205ENST00000526204 RIPPLY2Q5TAB7 128 aa18.5■□□□□ 0.55
VPS28-205ENST00000526204 ZNF585AQ6P3V2 769 aa18.5■□□□□ 0.55
VPS28-205ENST00000526204 ASCL4Q6XD76 172 aa18.5■□□□□ 0.55
VPS28-205ENST00000526204 MUC3AQ02505 3323 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 IGKV1D-8A0A087WSZ0 117 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 FAM230AA0A1W2PPH8 454 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 TRIM77I1YAP6 450 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 TAAR5O14804 337 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 HOXB5P09067 269 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 NTF4P34130 210 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 ABLIM2Q6H8Q1 611 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 ATRAIDQ6UW56 229 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 PPP1R32Q7Z5V6 425 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 BORCS8Q96FH0 119 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 GSKIPQ9P0R6 139 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 MRPS18CQ9Y3D5 142 aaKnown RBP18.49■□□□□ 0.55
VPS28-205ENST00000526204 MSGN1A6NI15 193 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 MASP2O00187 686 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 LAMTOR5O43504 91 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 CXCL13O43927 109 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 ZNF32P17041 273 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 PTGER4P35408 488 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 RSPO4Q2I0M5 234 aaPredicted RBP18.49■□□□□ 0.55
VPS28-205ENST00000526204 CCDC157Q569K6 752 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 TMEM42Q69YG0 159 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 ZNF100Q8IYN0 542 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 OR2V1Q8NHB1 315 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 ARL11Q969Q4 196 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 PADI1Q9ULC6 663 aa18.49■□□□□ 0.55
VPS28-205ENST00000526204 A0A0G2JMM0 328 aa18.48■□□□□ 0.55
VPS28-205ENST00000526204 A0A1W2PPB8 328 aa18.48■□□□□ 0.55
VPS28-205ENST00000526204 A0A1W2PRS3 328 aa18.48■□□□□ 0.55
VPS28-205ENST00000526204 KIR3DP1A8MWS1 328 aa18.48■□□□□ 0.55
VPS28-205ENST00000526204 HTR5AP47898 357 aa18.48■□□□□ 0.55
VPS28-205ENST00000526204 HGFACQ04756 655 aa18.48■□□□□ 0.55
VPS28-205ENST00000526204 TRIM61Q5EBN2 209 aa18.48■□□□□ 0.55
VPS28-205ENST00000526204 DCAF12Q5T6F0 453 aa18.48■□□□□ 0.55
VPS28-205ENST00000526204 H3F3CQ6NXT2 135 aa18.48■□□□□ 0.55
VPS28-205ENST00000526204 TMED6Q8WW62 240 aa18.48■□□□□ 0.55
VPS28-205ENST00000526204 FOXB1Q99853 325 aa18.48■□□□□ 0.55
VPS28-205ENST00000526204 FAAP24Q9BTP7 215 aa18.48■□□□□ 0.55
VPS28-205ENST00000526204 NECAP2Q9NVZ3 263 aa18.48■□□□□ 0.55
VPS28-205ENST00000526204 TCFL5Q9UL49 500 aa18.48■□□□□ 0.55
VPS28-205ENST00000526204 TMEM218A2RU14 115 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 CDK2AP1O14519 115 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 ANGPTL7O43827 346 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 NRASP01111 189 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 OR5H8P0DN80 308 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 B4GALT1P15291 398 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 OTX2P32243 289 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 TAF9Q16594 264 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 EIF5AL1Q6IS14 154 aaKnown RBP18.47■□□□□ 0.55
VPS28-205ENST00000526204 BHLHE23Q8NDY6 225 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 ADGRG7Q96K78 797 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 CMSS1Q9BQ75 279 aaKnown RBP18.47■□□□□ 0.55
VPS28-205ENST00000526204 HDHD3Q9BSH5 251 aaPredicted RBP18.47■□□□□ 0.55
VPS28-205ENST00000526204 SLC5A7Q9GZV3 580 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 IGKV1-27A0A075B6S5 117 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 CRYM-AS1A6NIL9 109 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 SPRY1O43609 319 aaPredicted RBP18.47■□□□□ 0.55
VPS28-205ENST00000526204 IFNA21P01568 189 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 SFTPBP07988 381 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 S100A10P60903 97 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 PSG4Q00888 419 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 RBM39Q14498 530 aaKnown RBP18.47■□□□□ 0.55
VPS28-205ENST00000526204 DHRS11Q6UWP2 260 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 OR51F2Q8NH61 342 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 OR10D3Q8NH80 312 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 AKR7LQ8NHP1 331 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 GUCD1Q96NT3 240 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 ALKBH3Q96Q83 286 aaPredicted RBP18.47■□□□□ 0.55
VPS28-205ENST00000526204 MICU1Q9BPX6 476 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 NKX6-2Q9C056 277 aaPredicted RBP18.47■□□□□ 0.55
VPS28-205ENST00000526204 AK3Q9UIJ7 227 aa18.47■□□□□ 0.55
VPS28-205ENST00000526204 PMS2P1A4D2B8 440 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 LRRC3CA6NJW4 275 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 ATG12O94817 140 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 Q0VFX4 171 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 IAH1Q2TAA2 248 aaPredicted RBP18.46■□□□□ 0.55
VPS28-205ENST00000526204 ACER2Q5QJU3 275 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 BOLLQ8N9W6 283 aaKnown RBP18.46■□□□□ 0.55
VPS28-205ENST00000526204 FNDC9Q8TBE3 224 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 OR2H1Q9GZK4 316 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 ACKR4Q9NPB9 350 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 PCDHB16Q9NRJ7 776 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 IL36GQ9NZH8 169 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 WDR87Q6ZQQ6 2873 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 DNASE2O00115 360 aaPredicted RBP18.46■□□□□ 0.55
VPS28-205ENST00000526204 TERTO14746 1132 aaKnown RBP18.46■□□□□ 0.55
VPS28-205ENST00000526204 NUPL2O15504 423 aaKnown RBP18.46■□□□□ 0.55
VPS28-205ENST00000526204 TRAPPC6AO75865 159 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 RFPL3SP0C7P2 107 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 FAM157CP0CG43 387 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 CHATP28329 748 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 RGS19P49795 217 aa18.46■□□□□ 0.55
VPS28-205ENST00000526204 SSPNQ14714 243 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms