RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 TFR2Q9UP52 801 aa2.15□□□□□ -2.07
HMGB1P28-201ENST00000507778 ORC6Q9Y5N6 252 aa2.15□□□□□ -2.07
HMGB1P28-201ENST00000507778 TRAV8-7A0A075B6U6 113 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 IGLV7-43P04211 117 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 OR4Q2P0C623 313 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 HLA-GP17693 338 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 NUP62P37198 522 aaPredicted RBP2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 RGS6P49758 472 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 TBPL2Q6SJ96 375 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 PP632Q6XCG6 107 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 CA13Q8N1Q1 262 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 OR6N2Q8NGY6 317 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 ZNF420Q8TAQ5 688 aaPredicted RBP2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 NT5CQ8TCD5 201 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 YIPF6Q96EC8 236 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 UTP23Q9BRU9 249 aaKnown RBP2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 MS4A8Q9BY19 250 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 MRPL20Q9BYC9 149 aaKnown RBP2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 API5Q9BZZ5 524 aaKnown RBP2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 VCX3AQ9NNX9 186 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 STX18Q9P2W9 335 aaKnown RBP2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 HMGXB4Q9UGU5 601 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 PRO0628Q9UI54 55 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 ADGRL1O94910 1474 aa2.14□□□□□ -2.07
HMGB1P28-201ENST00000507778 TUBGCP6Q96RT7 1819 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 TVP23AA6NH52 213 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 OR6C70A6NIJ9 312 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 M0R1B8 84 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 PRMT5O14744 637 aaPredicted RBP2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 LIPCP11150 499 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 DEKP35659 375 aaKnown RBP2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 IL5RAQ01344 420 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 FLI1Q01543 452 aaPredicted RBP2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 DYNC1I2Q13409 638 aaKnown RBP2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 PMVKQ15126 192 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 TOMM34Q15785 309 aaPredicted RBP2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 IGFBP7Q16270 282 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 ZNF678Q5SXM1 525 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 SYT6Q5T7P8 510 aaPredicted RBP2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 SETD3Q86TU7 594 aaPredicted RBP2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 ITPRIPQ8IWB1 547 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 SGPP2Q8IWX5 399 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 ZNF680Q8NEM1 530 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 OR1P1Q8NH06 330 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 SMIM8Q96KF7 97 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 DERL3Q96Q80 235 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 METTL26Q96S19 204 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 SEC22CQ9BRL7 303 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 SYT4Q9H2B2 425 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 AP3M1Q9Y2T2 418 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 ELP1O95163 1332 aa2.13□□□□□ -2.07
HMGB1P28-201ENST00000507778 E7EWF7 191 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 CLDN34H7C241 214 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 TCAPO15273 167 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 RNF113AO15541 343 aaKnown RBP2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 IGHV1-46P01743 117 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 CCDC172P0C7W6 258 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 HLA-DMAP28067 261 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 TGFBR1P36897 503 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 P2RY2P41231 377 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 TGM4P49221 684 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 ATP5J2P56134 94 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 OR12D2P58182 307 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 RPL10AP62906 217 aaKnown RBP2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 ATP5G2Q06055 141 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 IL15RAQ13261 267 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 IDNKQ5T6J7 187 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 FAM104BQ5XKR9 115 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 PID1Q7Z2X4 250 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 DAZ4Q86SG3 579 aaKnown RBP2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 NT5DC3Q86UY8 548 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 LRRC8AQ8IWT6 810 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 NELFCDQ8IXH7 590 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 OR4K2Q8NGD2 314 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 FAM57AQ8TBR7 257 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 RILPQ96NA2 401 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 OR2M4Q96R27 311 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 ZNF649Q9BS31 505 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 SLC38A1Q9H2H9 487 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 WDR55Q9H6Y2 383 aaPredicted RBP2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 SND1-IT1Q9HBX3 110 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 DAZ1Q9NQZ3 744 aaKnown RBP2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 DDIT4Q9NX09 232 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 VAPAQ9P0L0 249 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 ACOT9Q9Y305 439 aa2.12□□□□□ -2.07
HMGB1P28-201ENST00000507778 KIF26AQ9ULI4 1882 aaPredicted RBP2.11□□□□□ -2.07
HMGB1P28-201ENST00000507778 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.11□□□□□ -2.07
HMGB1P28-201ENST00000507778 K7EN84 100 aa2.11□□□□□ -2.07
HMGB1P28-201ENST00000507778 ZNF593O00488 134 aaPredicted RBP2.11□□□□□ -2.07
HMGB1P28-201ENST00000507778 IGKV1D-16P01601 117 aa2.11□□□□□ -2.07
HMGB1P28-201ENST00000507778 PFN1P07737 140 aaKnown RBP2.11□□□□□ -2.07
HMGB1P28-201ENST00000507778 SNRPAP09012 282 aaKnown RBP2.11□□□□□ -2.07
HMGB1P28-201ENST00000507778 SEC11BP0C7V7 166 aa2.11□□□□□ -2.07
HMGB1P28-201ENST00000507778 GPR4P46093 362 aa2.11□□□□□ -2.07
HMGB1P28-201ENST00000507778 RPS11P62280 158 aaKnown RBP eCLIP2.11□□□□□ -2.07
HMGB1P28-201ENST00000507778 FAM53BQ14153 422 aa2.11□□□□□ -2.07
HMGB1P28-201ENST00000507778 VAMP3Q15836 100 aa2.11□□□□□ -2.07
HMGB1P28-201ENST00000507778 KCTD16Q68DU8 428 aa2.11□□□□□ -2.07
HMGB1P28-201ENST00000507778 CLEC19AQ6UXS0 136 aa2.11□□□□□ -2.07
HMGB1P28-201ENST00000507778 TMEM136Q6ZRR5 245 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms