RNA–Protein interactions for RNA: ENST00000498808.5

HDAC6-236, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-236ENST00000498808 LIN7BQ9HAP6 207 aa12.41□□□□□ -0.42
HDAC6-236ENST00000498808 INTS9Q9NV88 658 aaKnown RBP12.41□□□□□ -0.42
HDAC6-236ENST00000498808 RASL12Q9NYN1 266 aa12.41□□□□□ -0.42
HDAC6-236ENST00000498808 ZMAT5Q9UDW3 170 aaKnown RBP12.41□□□□□ -0.42
HDAC6-236ENST00000498808 MINOS1-NBL1R4GNA1 71 aa12.41□□□□□ -0.42
HDAC6-236ENST00000498808 STARD9Q9P2P6 4700 aa12.4□□□□□ -0.42
HDAC6-236ENST00000498808 RAMP3O60896 148 aa12.4□□□□□ -0.42
HDAC6-236ENST00000498808 GADD45GO95257 159 aa12.4□□□□□ -0.42
HDAC6-236ENST00000498808 RBP4P02753 201 aa12.4□□□□□ -0.42
HDAC6-236ENST00000498808 ZNF728P0DKX0 622 aa12.4□□□□□ -0.42
HDAC6-236ENST00000498808 RPL23AP62750 156 aaKnown RBP12.4□□□□□ -0.42
HDAC6-236ENST00000498808 TSPAN31Q12999 210 aa12.4□□□□□ -0.42
HDAC6-236ENST00000498808 KRT72Q14CN4 511 aa12.4□□□□□ -0.42
HDAC6-236ENST00000498808 LINC01590Q5TEZ4 76 aa12.4□□□□□ -0.42
HDAC6-236ENST00000498808 C8orf86Q6ZUL3 223 aa12.4□□□□□ -0.42
HDAC6-236ENST00000498808 OSR2Q8N2R0 312 aa12.4□□□□□ -0.42
HDAC6-236ENST00000498808 OR8D4Q8NGM9 314 aa12.4□□□□□ -0.42
HDAC6-236ENST00000498808 OR6K6Q8NGW6 343 aa12.4□□□□□ -0.42
HDAC6-236ENST00000498808 OR8B4Q96RC9 309 aa12.4□□□□□ -0.42
HDAC6-236ENST00000498808 TBC1D23Q9NUY8 699 aa12.4□□□□□ -0.42
HDAC6-236ENST00000498808 CDH10Q9Y6N8 788 aa12.4□□□□□ -0.42
HDAC6-236ENST00000498808 SLC22A2O15244 555 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 PGA5P0DJD9 388 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 ACTA2P62736 377 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 ACTG2P63267 376 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 ACTC1P68032 377 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 ACTA1P68133 377 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 CEACAM21Q3KPI0 293 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 KRT74Q7RTS7 529 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 TCF23Q7RTU1 214 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 OR2W3Q7Z3T1 314 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 PIGWQ7Z7B1 504 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 Q8NFD4 153 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 OR52L1Q8NGH7 329 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 OR6N2Q8NGY6 317 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 NDNFQ8TB73 568 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 BCAS4Q8TDM0 211 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 AKR1E2Q96JD6 320 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 SLC25A33Q9BSK2 321 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 MRGBPQ9NV56 204 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 VNN3Q9NY84 501 aa12.39□□□□□ -0.43
HDAC6-236ENST00000498808 MYCNOSP40205 109 aa12.38□□□□□ -0.43
HDAC6-236ENST00000498808 SMIM11AP58511 58 aa12.38□□□□□ -0.43
HDAC6-236ENST00000498808 ZNF329Q86UD4 541 aa12.38□□□□□ -0.43
HDAC6-236ENST00000498808 OR8B12Q8NGG6 310 aa12.38□□□□□ -0.43
HDAC6-236ENST00000498808 OR5A2Q8NGI9 324 aa12.38□□□□□ -0.43
HDAC6-236ENST00000498808 GNPDA2Q8TDQ7 276 aa12.38□□□□□ -0.43
HDAC6-236ENST00000498808 ATP6V1G3Q96LB4 118 aa12.38□□□□□ -0.43
HDAC6-236ENST00000498808 IGHV2-26A0A0B4J1V2 119 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 PSMB11A5LHX3 300 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 OR5B21A6NL26 309 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 H3BUI4 141 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 K7N7A8 449 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 OR2F2O95006 317 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 H2BFMP0C1H6 154 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 LYL1P12980 280 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 CHATP28329 748 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 IFNGR2P38484 337 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 LUMP51884 338 aaPredicted RBP12.37□□□□□ -0.43
HDAC6-236ENST00000498808 SF3A3Q12874 501 aaKnown RBP eCLIP12.37□□□□□ -0.435e-7■■■□□ 17.5
HDAC6-236ENST00000498808 C8orf82Q6P1X6 216 aaPredicted RBP12.37□□□□□ -0.43
HDAC6-236ENST00000498808 ERI1Q8IV48 349 aaKnown RBP12.37□□□□□ -0.43
HDAC6-236ENST00000498808 BATF2Q8N1L9 274 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 OR4P4Q8NGL7 312 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 CAPSLQ8WWF8 208 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 RBM14Q96PK6 669 aaKnown RBP12.37□□□□□ -0.43
HDAC6-236ENST00000498808 INTS14Q96SY0 518 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 KCTD14Q9BQ13 255 aaPredicted RBP12.37□□□□□ -0.43
HDAC6-236ENST00000498808 DCAF13Q9NV06 445 aaKnown RBP12.37□□□□□ -0.43
HDAC6-236ENST00000498808 IL20Q9NYY1 176 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 OR14J1Q9UGF5 321 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 V9GYQ6 96 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 CSMD3Q7Z407 3707 aa12.37□□□□□ -0.43
HDAC6-236ENST00000498808 HYDINQ4G0P3 5121 aa12.36□□□□□ -0.43
HDAC6-236ENST00000498808 SEMG1P04279 462 aa12.36□□□□□ -0.43
HDAC6-236ENST00000498808 BLVRAP53004 296 aa12.36□□□□□ -0.43
HDAC6-236ENST00000498808 EDDM3BP56851 147 aa12.36□□□□□ -0.43
HDAC6-236ENST00000498808 C9orf152Q5JTZ5 239 aa12.36□□□□□ -0.43
HDAC6-236ENST00000498808 RPL13AP3Q6NVV1 102 aa12.36□□□□□ -0.43
HDAC6-236ENST00000498808 KCTD18Q6PI47 426 aaPredicted RBP12.36□□□□□ -0.43
HDAC6-236ENST00000498808 OR4Q3Q8NH05 313 aa12.36□□□□□ -0.43
HDAC6-236ENST00000498808 FAM81AQ8TBF8 368 aa12.36□□□□□ -0.43
HDAC6-236ENST00000498808 ZNF714Q96N38 554 aa12.36□□□□□ -0.43
HDAC6-236ENST00000498808 RCHY1Q96PM5 261 aa12.36□□□□□ -0.43
HDAC6-236ENST00000498808 DUX3Q96PT4 197 aa12.36□□□□□ -0.43
HDAC6-236ENST00000498808 VIPAS39Q9H9C1 493 aa12.36□□□□□ -0.43
HDAC6-236ENST00000498808 SAMD4AQ9UPU9 718 aaKnown RBP12.36□□□□□ -0.43
HDAC6-236ENST00000498808 NUDT19A8MXV4 375 aa12.35□□□□□ -0.43
HDAC6-236ENST00000498808 NOS1APO75052 506 aaPredicted RBP12.35□□□□□ -0.43
HDAC6-236ENST00000498808 ZNF737O75373 536 aa12.35□□□□□ -0.43
HDAC6-236ENST00000498808 NXPH2O95156 264 aa12.35□□□□□ -0.43
HDAC6-236ENST00000498808 SNRNP70P08621 437 aaKnown RBP12.35□□□□□ -0.43
HDAC6-236ENST00000498808 HTR1DP28221 377 aa12.35□□□□□ -0.43
HDAC6-236ENST00000498808 RRM2P31350 389 aa12.35□□□□□ -0.43
HDAC6-236ENST00000498808 MAP2K3P46734 347 aa12.35□□□□□ -0.43
HDAC6-236ENST00000498808 IL18R1Q13478 541 aa12.35□□□□□ -0.43
HDAC6-236ENST00000498808 GLYATQ6IB77 296 aa12.35□□□□□ -0.43
HDAC6-236ENST00000498808 MOB3CQ70IA8 216 aa12.35□□□□□ -0.43
HDAC6-236ENST00000498808 ZNF676Q8N7Q3 588 aa12.35□□□□□ -0.43
HDAC6-236ENST00000498808 ASCC1Q8N9N2 400 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms