RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 A0A1B0GX30 115 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 HSPB2A8KAH6 182 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 HSPB2Q16082 182 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 CST9LP1Q5W188 147 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 TMEM104Q8NE00 496 aa14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 NPDC1Q9NQX5 325 aaPredicted RBP14.51□□□□□ -0.09
CCDC88B-209ENST00000494080 PIGBOS1A0A0B4J2F0 54 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 RBMS3Q6XE24 437 aaKnown RBP14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 NPEPL1Q8NDH3 523 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 RGP1Q92546 391 aaPredicted RBP14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 IER2Q9BTL4 223 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 A0A1W2PPE2 198 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 RER1O15258 196 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 ECI1P42126 302 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 ACAA2P42765 397 aaKnown RBP14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 ASCL1P50553 236 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 IL11RAQ14626 422 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 SARGQ9BW04 601 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 RAB18Q9NP72 206 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 ENY2Q9NPA8 101 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 SIP14410 1827 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 ZNF727A8MUV8 499 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 OR2A4O95047 310 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 GSK3AP49840 483 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 NANOS3P60323 173 aaKnown RBP14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 SP6Q3SY56 376 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 COMMD1Q8N668 190 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 OR2A7Q96R45 310 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 P4HTMQ9NXG6 502 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 TRPM7Q96QT4 1865 aa14.5□□□□□ -0.09
CCDC88B-209ENST00000494080 MPTX1A8MV57 137 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 GLRA1P23415 457 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 H3F3AP84243 136 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 ZNF345Q14585 488 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 C1orf210Q8IVY1 113 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 ZNF383Q8NA42 475 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 LIN37Q96GY3 246 aaPredicted RBP14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 AP1S3Q96PC3 154 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 PLA2G3Q9NZ20 509 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 FAM221AA4D161 298 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 FAHP16930 419 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 PABPC1L2AQ5JQF8 200 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 PRSS27Q9BQR3 290 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 LANCL2Q9NS86 450 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 DUSP13Q9UII6 198 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 GSTP1P09211 210 aaKnown RBP14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 MUC1P15941 1255 aaPredicted RBP14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 PAX6P26367 422 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 LTC4SQ16873 150 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 NECAP2Q9NVZ3 263 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 R4GN57 208 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 DOCK4Q8N1I0 1966 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 SHISA7A6NL88 538 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 TCAPO15273 167 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 COL19A1Q14993 1142 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 TVP23CQ96ET8 276 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 MAGT1Q9H0U3 335 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 PLK3Q9H4B4 646 aa14.49□□□□□ -0.09
CCDC88B-209ENST00000494080 DNASE2O00115 360 aaPredicted RBP14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 OR5H8P0DN80 308 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 IRF2P14316 349 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 RBP2P50120 134 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 FZD5Q13467 585 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 SHBQ15464 509 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 VASH2Q86V25 355 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 ZNF429Q86V71 674 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 NR2C2APQ86WQ0 139 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 OR5AS1Q8N127 324 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 CARFQ8N187 725 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 OR4C45A6NMZ5 311 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 SFT2D2O95562 160 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 FGF7P21781 194 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 CALCRP30988 508 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 SULT1A1P50225 295 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 PIGPP57054 158 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 SKP2Q13309 424 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 CEACAM16Q2WEN9 425 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 MESTQ5EB52 335 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 C9orf40Q8IXQ3 194 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 FAM185AQ8N0U4 392 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 NOXO1Q8NFA2 376 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 RTN4IP1Q8WWV3 396 aaPredicted RBP14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 GDF15Q99988 308 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 MOB1AQ9H8S9 216 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 TIMM10BQ9Y5J6 103 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 LRRC37A2A6NM11 1700 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 PLPP3O14495 311 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 YIF1AO95070 293 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 IL2RGP31785 369 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 BTCP35070 178 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 SRPXP78539 464 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 PLXDC2Q6UX71 529 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 HEXA-AS1Q9H8Q6 139 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 DSCR4P56555 118 aaPredicted RBP14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 TMEM33P57088 247 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 SLC10A1Q14973 349 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 TMEM255AQ5JRV8 349 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 GGNBP1Q5YKI7 109 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 ZNF485Q8NCK3 441 aa14.48□□□□□ -0.09
CCDC88B-209ENST00000494080 RASL10BQ96S79 203 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms