RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 OR6C6A6NF89 314 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 KRBOX1C9JBD0 128 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 SERPINA7P05543 415 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 RPS2P15880 293 aaKnown RBP7.78□□□□□ -1.16
SYNE1-217ENST00000466159 RRADP55042 308 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 FOXO1Q12778 655 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 RSU1Q15404 277 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 ABLIM2Q6H8Q1 611 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 ELP2Q6IA86 826 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 RPUSD3Q6P087 351 aaKnown RBP7.78□□□□□ -1.16
SYNE1-217ENST00000466159 SKA3Q8IX90 412 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 ZSCAN4Q8NAM6 433 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-217ENST00000466159 SPSB1Q96BD6 273 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 SCGB3A2Q96PL1 93 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 WNT5BQ9H1J7 359 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 RAB18Q9NP72 206 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 SIGLEC5O15389 551 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 CSTBP04080 98 aaKnown RBP7.78□□□□□ -1.16
SYNE1-217ENST00000466159 GFRA1P56159 465 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 CYCSP99999 105 aaKnown RBP7.78□□□□□ -1.16
SYNE1-217ENST00000466159 SIGLEC14Q08ET2 396 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 SNTB1Q13884 538 aaKnown RBP7.78□□□□□ -1.16
SYNE1-217ENST00000466159 BRICD5Q6PL45 260 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 EIF4E3Q8N5X7 224 aaKnown RBP7.78□□□□□ -1.16
SYNE1-217ENST00000466159 BOLLQ8N9W6 283 aaKnown RBP7.78□□□□□ -1.16
SYNE1-217ENST00000466159 CCDC54Q8NEL0 328 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 EMG1Q92979 244 aaKnown RBP7.78□□□□□ -1.16
SYNE1-217ENST00000466159 MRPS24Q96EL2 167 aaKnown RBP7.78□□□□□ -1.16
SYNE1-217ENST00000466159 THOC3Q96J01 351 aaKnown RBP7.78□□□□□ -1.16
SYNE1-217ENST00000466159 OR2H1Q9GZK4 316 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 SHARPINQ9H0F6 387 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 METTL9Q9H1A3 318 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 METTL8Q9H825 291 aaKnown RBP7.78□□□□□ -1.16
SYNE1-217ENST00000466159 GPR35Q9HC97 309 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 OR5AC2Q9NZP5 309 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 LRFN1Q9P244 771 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 TIMM10BQ9Y5J6 103 aa7.78□□□□□ -1.16
SYNE1-217ENST00000466159 TRBV6-7A0A0A0MS04 114 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 MSGN1A6NI15 193 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 ZNHIT1O43257 154 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF205O95201 554 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 HOXB5P09067 269 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 RBP2P50120 134 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF92Q03936 586 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 SRYQ05066 204 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 BTN1A1Q13410 526 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 KRTAP27-1Q3LI81 207 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 PAN3Q58A45 887 aaKnown RBP7.77□□□□□ -1.17
SYNE1-217ENST00000466159 PXDC1Q5TGL8 231 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 DYRK2Q92630 601 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 PIK3IP1Q96FE7 263 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 BORCS8Q96FH0 119 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF2Q9BSG1 426 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-217ENST00000466159 ARRDC1-AS1Q9H2J1 176 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 ACKR4Q9NPB9 350 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 NCOR1O75376 2440 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 A0A0B4J2A0 478 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 IGKV1-12A0A0C4DH73 117 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 C9orf172C9J069 976 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 CYTIPO60759 359 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 NRASP01111 189 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 IGKV1D-12P01611 117 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 CELA3AP09093 270 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 JMJD7P0C870 316 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 CNR1P21554 472 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 OPRM1P35372 400 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 PTGER4P35408 488 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 PPIAP62937 165 aaKnown RBP7.77□□□□□ -1.17
SYNE1-217ENST00000466159 FAM3AP98173 230 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 ARL6IP1Q15041 203 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 CNN3Q15417 329 aaKnown RBP7.77□□□□□ -1.17
SYNE1-217ENST00000466159 PIGYQ3MUY2 71 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 DBX2Q6ZNG2 339 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 OR51F2Q8NH61 342 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 PHYHIPLQ96FC7 376 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 SIGLEC12Q96PQ1 595 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 TAAR9Q96RI9 348 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 HES7Q9BYE0 225 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 LIME1Q9H400 295 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 TAS2R3Q9NYW6 316 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 FOXJ2Q9P0K8 574 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 GSKIPQ9P0R6 139 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 SHPKQ9UHJ6 478 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 AK3Q9UIJ7 227 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 DNAJC13O75165 2243 aa7.77□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF407Q9C0G0 2248 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 TEX13DA0A0J9YY54 714 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-217ENST00000466159 A0A1W2PNU3 283 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF587BE7ETH6 402 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 GEMIN2O14893 280 aaKnown RBP7.76□□□□□ -1.17
SYNE1-217ENST00000466159 CA11O75493 328 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 MPLP40238 635 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 RAB32Q13637 225 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 PDCD1Q15116 288 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 ZNF528Q3MIS6 628 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 RIPPLY2Q5TAB7 128 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 TSPO2Q5TGU0 170 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 C9orf135Q5VTT2 229 aa7.76□□□□□ -1.17
SYNE1-217ENST00000466159 CPEB3Q8NE35 698 aaKnown RBP7.76□□□□□ -1.17
SYNE1-217ENST00000466159 CPNE4Q96A23 557 aaPredicted RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms