RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 PSMD9O00233 223 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 SLC1A7O00341 560 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 SYNGR1O43759 233 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 IGLV3-1P01715 115 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 HMGN1P05114 100 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 RAP2AP10114 183 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 CD28P10747 220 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 FAHP16930 419 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 CEBPDP49716 269 aaPredicted RBP18.29■□□□□ 0.52
USP4-208ENST00000464168 RAB13P51153 203 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 MNAT1P51948 309 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 CDK5Q00535 292 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 EMX1Q04741 257 aaPredicted RBP18.29■□□□□ 0.52
USP4-208ENST00000464168 SLC35D3Q5M8T2 416 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 PLCXD3Q63HM9 321 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 CCBE1Q6UXH8 406 aaPredicted RBP18.29■□□□□ 0.52
USP4-208ENST00000464168 PIGWQ7Z7B1 504 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 ARHGAP24Q8N264 748 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 TEAD3Q99594 435 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 PBOV1Q9GZY1 135 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 MMP28Q9H239 520 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 PIGLQ9Y2B2 252 aa18.29■□□□□ 0.52
USP4-208ENST00000464168 hCG_1809904A0A1W2PP81 198 aa18.28■□□□□ 0.52
USP4-208ENST00000464168 A0A1W2PPE2 198 aa18.28■□□□□ 0.52
USP4-208ENST00000464168 A0A1W2PR64 198 aa18.28■□□□□ 0.52
USP4-208ENST00000464168 A0A1W2PRV1 198 aa18.28■□□□□ 0.52
USP4-208ENST00000464168 GSC2O15499 205 aa18.28■□□□□ 0.52
USP4-208ENST00000464168 XPNPEP2O43895 674 aa18.28■□□□□ 0.52
USP4-208ENST00000464168 NOS1APO75052 506 aaPredicted RBP18.28■□□□□ 0.52
USP4-208ENST00000464168 FBXO24O75426 580 aa18.28■□□□□ 0.52
USP4-208ENST00000464168 DCTN3O75935 186 aa18.28■□□□□ 0.52
USP4-208ENST00000464168 CST1P01037 141 aa18.28■□□□□ 0.52
USP4-208ENST00000464168 PGA5P0DJD9 388 aa18.28■□□□□ 0.52
USP4-208ENST00000464168 RPS7P62081 194 aaKnown RBP18.28■□□□□ 0.52
USP4-208ENST00000464168 ZNF273Q14593 569 aa18.28■□□□□ 0.52
USP4-208ENST00000464168 ZBTB37Q5TC79 503 aa18.28■□□□□ 0.52
USP4-208ENST00000464168 ZNF782Q6ZMW2 699 aaPredicted RBP18.28■□□□□ 0.52
USP4-208ENST00000464168 COMMD2Q86X83 199 aa18.28■□□□□ 0.52
USP4-208ENST00000464168 WIPF2Q8TF74 440 aaPredicted RBP18.28■□□□□ 0.52
USP4-208ENST00000464168 CHID1Q9BWS9 393 aa18.28■□□□□ 0.52
USP4-208ENST00000464168 YIPF3Q9GZM5 350 aa18.28■□□□□ 0.52
USP4-208ENST00000464168 PRR32B1ATL7 298 aa18.27■□□□□ 0.52
USP4-208ENST00000464168 NRASP01111 189 aa18.27■□□□□ 0.52
USP4-208ENST00000464168 DLX6P56179 175 aa18.27■□□□□ 0.52
USP4-208ENST00000464168 KCTD18Q6PI47 426 aaPredicted RBP18.27■□□□□ 0.52
USP4-208ENST00000464168 CALHM1Q8IU99 346 aa18.27■□□□□ 0.52
USP4-208ENST00000464168 OR4S1Q8NGB4 309 aa18.27■□□□□ 0.52
USP4-208ENST00000464168 MRAPQ8TCY5 172 aa18.27■□□□□ 0.52
USP4-208ENST00000464168 NRIP2Q9BQI9 281 aa18.27■□□□□ 0.52
USP4-208ENST00000464168 CDCA4Q9BXL8 241 aa18.27■□□□□ 0.52
USP4-208ENST00000464168 MROQ9BYG7 248 aa18.27■□□□□ 0.52
USP4-208ENST00000464168 C1orf21Q9H246 121 aa18.27■□□□□ 0.52
USP4-208ENST00000464168 ENPP5Q9UJA9 477 aa18.27■□□□□ 0.52
USP4-208ENST00000464168 TCF19Q9Y242 345 aa18.27■□□□□ 0.52
USP4-208ENST00000464168 A6NDX4 124 aa18.26■□□□□ 0.51
USP4-208ENST00000464168 ADARB2-AS1A8MUL3 147 aa18.26■□□□□ 0.51
USP4-208ENST00000464168 J3QT63 122 aa18.26■□□□□ 0.51
USP4-208ENST00000464168 OSMP13725 252 aa18.26■□□□□ 0.51
USP4-208ENST00000464168 HAAOP46952 286 aa18.26■□□□□ 0.51
USP4-208ENST00000464168 LOXL3P58215 753 aa18.26■□□□□ 0.51
USP4-208ENST00000464168 ROM1Q03395 351 aa18.26■□□□□ 0.51
USP4-208ENST00000464168 APOFQ13790 326 aa18.26■□□□□ 0.51
USP4-208ENST00000464168 PLA1AQ53H76 456 aa18.26■□□□□ 0.51
USP4-208ENST00000464168 ZNF684Q5T5D7 378 aa18.26■□□□□ 0.51
USP4-208ENST00000464168 NDUFA11Q86Y39 141 aa18.26■□□□□ 0.51
USP4-208ENST00000464168 R3HDM4Q96D70 268 aa18.26■□□□□ 0.51
USP4-208ENST00000464168 OR8B4Q96RC9 309 aa18.26■□□□□ 0.51
USP4-208ENST00000464168 NUFIP1Q9UHK0 495 aaKnown RBP18.26■□□□□ 0.51
USP4-208ENST00000464168 C17orf98A8MV24 154 aa18.25■□□□□ 0.51
USP4-208ENST00000464168 ZNF254O75437 659 aa18.25■□□□□ 0.51
USP4-208ENST00000464168 NXPH2O95156 264 aa18.25■□□□□ 0.51
USP4-208ENST00000464168 TK1P04183 234 aa18.25■□□□□ 0.51
USP4-208ENST00000464168 LDLRAD2Q5SZI1 272 aa18.25■□□□□ 0.51
USP4-208ENST00000464168 TMEM236Q5W0B7 351 aa18.25■□□□□ 0.51
USP4-208ENST00000464168 TMEM42Q69YG0 159 aa18.25■□□□□ 0.51
USP4-208ENST00000464168 TMEM219Q86XT9 240 aa18.25■□□□□ 0.51
USP4-208ENST00000464168 ZNF573Q86YE8 665 aa18.25■□□□□ 0.51
USP4-208ENST00000464168 ZNF679Q8IYX0 411 aa18.25■□□□□ 0.51
USP4-208ENST00000464168 ADGRG5Q8IZF4 528 aa18.25■□□□□ 0.51
USP4-208ENST00000464168 HS3ST5Q8IZT8 346 aa18.25■□□□□ 0.51
USP4-208ENST00000464168 SGCDQ92629 289 aa18.25■□□□□ 0.51
USP4-208ENST00000464168 CITED2Q99967 270 aaPredicted RBP18.25■□□□□ 0.51
USP4-208ENST00000464168 HES4Q9HCC6 221 aa18.25■□□□□ 0.51
USP4-208ENST00000464168 NECAP2Q9NVZ3 263 aa18.25■□□□□ 0.51
USP4-208ENST00000464168 PQLC2LA1A4F0 135 aa18.24■□□□□ 0.51
USP4-208ENST00000464168 ODF3BA8MYP8 253 aa18.24■□□□□ 0.51
USP4-208ENST00000464168 DHRS3O75911 302 aa18.24■□□□□ 0.51
USP4-208ENST00000464168 TTRP02766 147 aa18.24■□□□□ 0.51
USP4-208ENST00000464168 PIPP12273 146 aaPredicted RBP18.24■□□□□ 0.51
USP4-208ENST00000464168 MFGE8Q08431 387 aaPredicted RBP18.24■□□□□ 0.51
USP4-208ENST00000464168 CNN3Q15417 329 aaKnown RBP18.24■□□□□ 0.51
USP4-208ENST00000464168 BATF2Q8N1L9 274 aa18.24■□□□□ 0.51
USP4-208ENST00000464168 MALSU1Q96EH3 234 aa18.24■□□□□ 0.51
USP4-208ENST00000464168 WNT10AQ9GZT5 417 aa18.24■□□□□ 0.51
USP4-208ENST00000464168 OR14J1Q9UGF5 321 aa18.24■□□□□ 0.51
USP4-208ENST00000464168 COPS3Q9UNS2 423 aa18.24■□□□□ 0.51
USP4-208ENST00000464168 CCDC182A6NF36 153 aa18.23■□□□□ 0.51
USP4-208ENST00000464168 ARG1P05089 322 aa18.23■□□□□ 0.51
USP4-208ENST00000464168 MRPL3P09001 348 aaKnown RBP18.23■□□□□ 0.51
USP4-208ENST00000464168 PRKACGP22612 351 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms