RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 FAM57AQ8TBR7 257 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 ORAOV1Q8WV07 137 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 BAALCQ8WXS3 180 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 PEX13Q92968 403 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 ISG20Q96AZ6 181 aaKnown RBP1.75□□□□□ -2.13
USP40-209ENST00000452724 OR2V2Q96R30 315 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 PEBP4Q96S96 227 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 PKMYT1Q99640 499 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 PLA2G12AQ9BZM1 189 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 OR2AG1Q9H205 316 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 BLZF1Q9H2G9 400 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 DUSP21Q9H596 190 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 ARMC7Q9H6L4 198 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 VSIRQ9H7M9 311 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 FAM60AQ9NP50 221 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 CHRAC1Q9NRG0 131 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 TUBG2Q9NRH3 451 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 ZMAT5Q9UDW3 170 aaKnown RBP1.75□□□□□ -2.13
USP40-209ENST00000452724 ZSWIM8A7E2V4 1837 aa1.75□□□□□ -2.13
USP40-209ENST00000452724 TTC41PQ6P2S7 1318 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 ZBED9Q6R2W3 1325 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 H0YIV9 168 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 CASC3O15234 703 aaKnown RBP1.74□□□□□ -2.13
USP40-209ENST00000452724 IGHG2P01859 326 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 OR4Q2P0C623 313 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 SEC11BP0C7V7 166 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 PSMB2P49721 201 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 DAOAP59103 153 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 FMODQ06828 376 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 SPAG1Q07617 926 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 LAMTOR4Q0VGL1 99 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 SLC9A3R2Q15599 337 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 PYDC2Q56P42 97 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 LDLRAD2Q5SZI1 272 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 ZNF660Q6AZW8 331 aaPredicted RBP1.74□□□□□ -2.13
USP40-209ENST00000452724 AMMECR1LQ6DCA0 310 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 TTC19Q6DKK2 380 aaPredicted RBP1.74□□□□□ -2.13
USP40-209ENST00000452724 OR8K3Q8NH51 312 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 RBPMSQ93062 196 aaKnown RBP1.74□□□□□ -2.13
USP40-209ENST00000452724 IL22Q9GZX6 179 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 RDH14Q9HBH5 336 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 PRR14LQ5THK1 2151 aa1.74□□□□□ -2.13
USP40-209ENST00000452724 SBNO1A3KN83 1393 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 PLEKHG2Q9H7P9 1386 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 A0A1W2PRF3 423 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 A0A1W2PRM7 423 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 C15orf65H3BRN8 121 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 NDUFS5O43920 106 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 CXorf1O96002 111 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 PAX6P26367 422 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 CFHR2P36980 270 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 TUFMP49411 452 aaKnown RBP1.73□□□□□ -2.13
USP40-209ENST00000452724 HCCSP53701 268 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 KLF3P57682 345 aaPredicted RBP1.73□□□□□ -2.13
USP40-209ENST00000452724 ST3GAL4Q11206 333 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 CPTPQ5TA50 214 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 LIN9Q5TKA1 542 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 ZNF470Q6ECI4 717 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 WDR59Q6PJI9 974 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 SMARCD3Q6STE5 483 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 SLC35D2Q76EJ3 337 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 VTCN1Q7Z7D3 282 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 TCP10LQ8TDR4 215 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 ITLN2Q8WWU7 325 aaPredicted RBP1.73□□□□□ -2.13
USP40-209ENST00000452724 RNF170Q96K19 258 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 C6orf50Q9HD87 102 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 PEF1Q9UBV8 284 aaKnown RBP1.73□□□□□ -2.13
USP40-209ENST00000452724 SIGLEC1Q9BZZ2 1709 aa1.73□□□□□ -2.13
USP40-209ENST00000452724 C9JQL5 133 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 D6RAR5 112 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 SFTPCP11686 197 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 GNRHRP30968 328 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 CSKP41240 450 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 NUDT2P50583 147 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 KRTAP12-4P60329 112 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 SLC35B1P78383 322 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 PMVKQ15126 192 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 ZNF141Q15928 474 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 LINC00303Q3SY05 128 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 CDNFQ49AH0 187 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 TTC32Q5I0X7 151 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 PAGE2Q7Z2X7 111 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 ZDHHC22Q8N966 263 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 OR5T3Q8NGG3 340 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 OR6K6Q8NGW6 343 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 CMTM2Q8TAZ6 248 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 ACTL9Q8TC94 416 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 ZFAND1Q8TCF1 268 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 ZNF707Q96C28 371 aaPredicted RBP1.72□□□□□ -2.13
USP40-209ENST00000452724 OTUB2Q96DC9 234 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 MRPL20Q9BYC9 149 aaKnown RBP1.72□□□□□ -2.13
USP40-209ENST00000452724 ABCG5Q9H222 651 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 RGCCQ9H4X1 137 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 ABCB9Q9NP78 766 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 TMEM38BQ9NVV0 291 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 PSME2Q9UL46 239 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 ORC6Q9Y5N6 252 aa1.72□□□□□ -2.13
USP40-209ENST00000452724 NLRC5Q86WI3 1866 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 ZNF878C9JN71 531 aa1.71□□□□□ -2.14
USP40-209ENST00000452724 CDK1P06493 297 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms