RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 Q96M85 177 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 TOX2Q96NM4 488 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 HLA-DQB1P01920 261 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 WRAP73Q9P2S5 460 aaPredicted RBP6.48□□□□□ -1.37
VPS53-204ENST00000437048 KCNK7Q9Y2U2 307 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 OR1C1Q15619 314 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 OR5R1Q8NH85 324 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 RHBDD1Q8TEB9 315 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 TNFRSF13CQ96RJ3 184 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 KCPQ6ZWJ8 1503 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FXYD1O00168 92 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 PITX3O75364 302 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 PLP1P60201 277 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 FOXB2Q5VYV0 432 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 OR51H1Q8NH63 302 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 OTOSQ8NHW6 89 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 SHISA4Q96DD7 197 aa6.48□□□□□ -1.37
VPS53-204ENST00000437048 A0A087WWC5 75 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 C7orf77A4D0Y5 90 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 DHRS7CA6NNS2 312 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 DCDP81605 110 aaKnown RBP6.47□□□□□ -1.37
VPS53-204ENST00000437048 METRNLQ641Q3 311 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 C17orf78Q8N4C9 275 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 PIPOXQ9P0Z9 390 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 FBXO4Q9UKT5 387 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 ACACAQ13085 2346 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 ADM5C9JUS6 153 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 ZNF737O75373 536 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 IGFBP1P08833 259 aaPredicted RBP6.47□□□□□ -1.37
VPS53-204ENST00000437048 TNFRSF1AP19438 455 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 CRYBB2P43320 205 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 SYPL1Q16563 259 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 HFEQ30201 348 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 VAX1Q5SQQ9 334 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 TMEM123Q8N131 208 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 CA13Q8N1Q1 262 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 AGBL5Q8NDL9 886 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 SLAMF6Q96DU3 332 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 GPX7Q96SL4 187 aaPredicted RBP6.47□□□□□ -1.37
VPS53-204ENST00000437048 SFXN3Q9BWM7 321 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 C1QTNF6Q9BXI9 259 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 P4HTMQ9NXG6 502 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 MTCH1Q9NZJ7 389 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 TBXA2RP21731 343 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 ARF6P62330 175 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 SLC38A11Q08AI6 406 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 ERGIC1Q969X5 290 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 TAPBPO15533 448 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 PRICKLE3O43900 615 aaPredicted RBP6.47□□□□□ -1.37
VPS53-204ENST00000437048 CTSVO60911 334 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 GRASPQ7Z6J2 395 aaPredicted RBP6.47□□□□□ -1.37
VPS53-204ENST00000437048 CXorf36Q9H7Y0 433 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 GKN1Q9NS71 199 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 EPHA2P29317 976 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 AWAT1Q58HT5 328 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 ZNF385DQ9H6B1 395 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 MRPS18AQ9NVS2 196 aaKnown RBP6.47□□□□□ -1.37
VPS53-204ENST00000437048 FGF18O76093 207 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 IGHA1P01876 353 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 Q6AWC8 147 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 TTC9BQ8N6N2 239 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 NUBPLQ8TB37 319 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 C20orf27Q9GZN8 174 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 BOLA1Q9Y3E2 137 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 C9orf170A2RU37 121 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 A8MWL6 223 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 HMGN4O00479 90 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 SLC25A17O43808 307 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 DHRS3O75911 302 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 C9orf135Q5VTT2 229 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 CACNG5Q9UF02 275 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 AMMECR1Q9Y4X0 333 aaPredicted RBP6.47□□□□□ -1.37
VPS53-204ENST00000437048 FAM72CH0Y354 149 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 SMPD2O60906 423 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 SLC19A1P41440 591 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 CT83Q5H943 113 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 FAM72AQ5TYM5 149 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 FAM72DQ6L9T8 149 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 FAM72BQ86X60 149 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 ZDHHC23Q8IYP9 409 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 C19orf47Q8N9M1 422 aaKnown RBP6.47□□□□□ -1.37
VPS53-204ENST00000437048 ZFP62Q8NB50 900 aaPredicted RBP6.47□□□□□ -1.37
VPS53-204ENST00000437048 OR8B4Q96RC9 309 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 C19orf67A6NJJ6 358 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 TIMM8AO60220 97 aaPredicted RBP6.47□□□□□ -1.37
VPS53-204ENST00000437048 RECKO95980 971 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 LIAT1Q6ZQX7 453 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 MED25Q71SY5 747 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 LURAP1LQ8IV03 231 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 TP53I13Q8NBR0 393 aaPredicted RBP6.47□□□□□ -1.37
VPS53-204ENST00000437048 IL21Q9HBE4 155 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 CD79AP11912 226 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 LGALS4P56470 323 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 TEAD2Q15562 447 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 LINC00303Q3SY05 128 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 CST9Q5W186 159 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 SLC25A34Q6PIV7 304 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 HSD17B10Q99714 261 aaKnown RBP6.47□□□□□ -1.37
VPS53-204ENST00000437048 APOOQ9BUR5 198 aa6.47□□□□□ -1.37
VPS53-204ENST00000437048 HINT3Q9NQE9 182 aaKnown RBP6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms