RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 OR51F2Q8NH61 342 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 NPRL2Q8WTW4 380 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 SPSB1Q96BD6 273 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 ZNF799Q96GE5 643 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 Q96M66 194 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 PIGQQ9BRB3 760 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 ZNF2Q9BSG1 426 aaPredicted RBP9.89□□□□□ -0.83
USP4-205ENST00000431357 METTL9Q9H1A3 318 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 TLNRD1Q9H1K6 362 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 WDR54Q9H977 334 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 ELL3Q9HB65 397 aaPredicted RBP9.89□□□□□ -0.83
USP4-205ENST00000431357 PARP11Q9NR21 331 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 ZNF701Q9NV72 531 aaPredicted RBP9.89□□□□□ -0.83
USP4-205ENST00000431357 PLEKHJ1Q9NW61 149 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 TUBD1Q9UJT1 453 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 HSF4Q9ULV5 492 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 CEP192Q8TEP8 1941 aa9.89□□□□□ -0.83
USP4-205ENST00000431357 ASXL3Q9C0F0 2248 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 BRWD1Q9NSI6 2320 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 A0A1W2PQM1 296 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 CRYM-AS1A6NIL9 109 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 K7EPK0 472 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 KNG1P01042 644 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 HEXAP06865 529 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 ZNF806P0C7X5 589 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 ZNF708P17019 499 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 KLK2P20151 261 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 EPHA8P29322 1005 aaPredicted RBP9.88□□□□□ -0.83
USP4-205ENST00000431357 RPL12P30050 165 aaKnown RBP9.88□□□□□ -0.83
USP4-205ENST00000431357 DSCR4P56555 118 aaPredicted RBP9.88□□□□□ -0.83
USP4-205ENST00000431357 BPIFB3P59826 476 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 SRSF3P84103 164 aaKnown RBP9.88□□□□□ -0.83
USP4-205ENST00000431357 PCOLCEQ15113 449 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 ZNF528Q3MIS6 628 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 PRAMEF20Q5VT98 475 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 GUSBP11Q6P575 273 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 PLXDC2Q6UX71 529 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 TMEM123Q8N131 208 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 FAM71E2Q8N5Q1 922 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 BHLHE23Q8NDY6 225 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 DMBX1Q8NFW5 382 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 CCDC74BQ96LY2 380 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 NRIP2Q9BQI9 281 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 ANGPTL4Q9BY76 406 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 HRH4Q9H3N8 390 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 PLEKHA2Q9HB19 425 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 ZFP57Q9NU63 452 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 RCC2Q9P258 522 aaKnown RBP9.88□□□□□ -0.83
USP4-205ENST00000431357 XIRP2A4UGR9 3374 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 C5orf63A6NC05 138 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 IGFBP4P22692 258 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 DTYMKP23919 212 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 RSPO1Q2MKA7 263 aaPredicted RBP9.88□□□□□ -0.83
USP4-205ENST00000431357 PHYHD1Q5SRE7 291 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 FAM27BQ5VT28 67 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 RPL7L1Q6DKI1 246 aaKnown RBP9.88□□□□□ -0.83
USP4-205ENST00000431357 LCN10Q6JVE6 187 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 MAML2Q8IZL2 1156 aaPredicted RBP9.88□□□□□ -0.83
USP4-205ENST00000431357 OR9K2Q8NGE7 335 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 MAFIPQ8WZ33 124 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 PIGTQ969N2 578 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 CPNE4Q96A23 557 aaPredicted RBP9.88□□□□□ -0.83
USP4-205ENST00000431357 RBM24Q9BX46 236 aaKnown RBP9.88□□□□□ -0.83
USP4-205ENST00000431357 PLEK2Q9NYT0 353 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 ANXA10Q9UJ72 324 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 KCNIP3Q9Y2W7 256 aa9.88□□□□□ -0.83
USP4-205ENST00000431357 RNASEK-C17orf49H0YIS7 233 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 LRP3O75074 770 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 MED6O75586 246 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 DEDDO75618 318 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 EIF3GO75821 320 aaKnown RBP eCLIP9.87□□□□□ -0.83
USP4-205ENST00000431357 ACAA1P09110 424 aaPredicted RBP9.87□□□□□ -0.83
USP4-205ENST00000431357 TMEM225BP0DP42 221 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 PTAFRP25105 342 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 F2RL1P55085 397 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 MRPS34P82930 218 aaKnown RBP9.87□□□□□ -0.83
USP4-205ENST00000431357 FAM3AP98173 230 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 CNN3Q15417 329 aaKnown RBP9.87□□□□□ -0.83
USP4-205ENST00000431357 EXT1Q16394 746 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 LBHQ53QV2 105 aaPredicted RBP9.87□□□□□ -0.83
USP4-205ENST00000431357 TMEM268Q5VZI3 342 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 RPUSD3Q6P087 351 aaKnown RBP9.87□□□□□ -0.83
USP4-205ENST00000431357 TMEM88Q6PEY1 159 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 BTNL8Q6UX41 500 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 C6orf201Q7Z4U5 140 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 SKA3Q8IX90 412 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 ZNF385AQ96PM9 386 aaKnown RBP9.87□□□□□ -0.83
USP4-205ENST00000431357 PRRX2Q99811 253 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 ULBP2Q9BZM5 246 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 ACKR4Q9NPB9 350 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 NIT2Q9NQR4 276 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 NECAP2Q9NVZ3 263 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 FOXD3Q9UJU5 478 aaPredicted RBP9.87□□□□□ -0.83
USP4-205ENST00000431357 MCTS1Q9ULC4 181 aaKnown RBP9.87□□□□□ -0.83
USP4-205ENST00000431357 PADI1Q9ULC6 663 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 DMRT1Q9Y5R6 373 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 ABCA7Q8IZY2 2146 aa9.87□□□□□ -0.83
USP4-205ENST00000431357 GJE1A6NN92 205 aa9.86□□□□□ -0.83
USP4-205ENST00000431357 DNPH1O43598 174 aa9.86□□□□□ -0.83
USP4-205ENST00000431357 CD5P06127 495 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms