RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 MS4A18Q3C1V0 323 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 FAM162BQ5T6X4 162 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 TMEM88Q6PEY1 159 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 ZNF793Q6ZN11 406 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 GRAMD2BQ96HH9 432 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 ABHD14AQ9BUJ0 271 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 MMP25Q9NPA2 562 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 TMEM272A0A1B0GTI8 110 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 PYCARD-AS1I3L0S3 204 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 RNF224P0DH78 156 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 RPL34P49207 117 aaKnown RBP13.74□□□□□ -0.21
PTPRF-206ENST00000429895 PPP1CAP62136 330 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 COMMD1Q8N668 190 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 FGF20Q9NP95 211 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-206ENST00000429895 CACFD1Q9UGQ2 172 aa13.74□□□□□ -0.21
PTPRF-206ENST00000429895 AMMECR1Q9Y4X0 333 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-206ENST00000429895 IGHV1OR15-9A0A0B4J2B8 117 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 K7ESF4 209 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 CD3EP07766 207 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 BAK1Q16611 211 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 C6orf201Q7Z4U5 140 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 ZNF768Q9H5H4 540 aaKnown RBP13.73□□□□□ -0.21
PTPRF-206ENST00000429895 ARRDC5A6NEK1 342 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 GATCO43716 136 aaKnown RBP13.73□□□□□ -0.21
PTPRF-206ENST00000429895 AGFG2O95081 481 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 EPPINO95925 133 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 WNT1P04628 370 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 ORM2P19652 201 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 NOL4LQ96MY1 436 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-206ENST00000429895 ZFP64Q9NPA5 681 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 PWWP2BQ6NUJ5 590 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 BHLHA15Q7RTS1 189 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-206ENST00000429895 CALHM3Q86XJ0 350 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 C4AP0C0L4 1744 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 MED19A0JLT2 244 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-206ENST00000429895 FAHD1Q6P587 224 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 VPS25Q9BRG1 176 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 UQCC1Q9NVA1 299 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 MBTPS2O43462 519 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 Q6ZNX1 250 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 SPSB1Q96BD6 273 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 TRAPPC4Q9Y296 219 aa13.73□□□□□ -0.21
PTPRF-206ENST00000429895 A0A0B4J2E0 115 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 A0A1B0GX12 115 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 SLC17A2O00624 439 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 FGF2P09038 288 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 TSPAN32Q96QS1 320 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 TRAPPC1Q9Y5R8 145 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 TMPRSS2O15393 492 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 RAE1P78406 368 aaKnown RBP13.72□□□□□ -0.21
PTPRF-206ENST00000429895 TMEM128Q5BJH2 165 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 OR1B1Q8NGR6 318 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 OR2A5Q96R48 311 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 BCL2L11O43521 198 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 TRAPPC2P0DI81 140 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 TRAPPC2BP0DI82 140 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 USF1P22415 310 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-206ENST00000429895 TPPP2P59282 170 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 HTRA4P83105 476 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-206ENST00000429895 ETFRF1Q6IPR1 90 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 SEBOXQ9HB31 216 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-206ENST00000429895 SNRPGP15A8MWD9 76 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 S100A8P05109 93 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 CALCRP30988 508 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 IGFBP7Q16270 282 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 C4orf45Q96LM5 186 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 ZMIZ1Q9ULJ6 1067 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 N4BP2Q86UW6 1770 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-206ENST00000429895 A0A1B0GTH9 108 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 DHRS3O75911 302 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 HOXB3P14651 431 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-206ENST00000429895 RPL7P18124 248 aaKnown RBP13.72□□□□□ -0.21
PTPRF-206ENST00000429895 EPHA8P29322 1005 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-206ENST00000429895 SLC38A11Q08AI6 406 aa13.72□□□□□ -0.21
PTPRF-206ENST00000429895 NXF2Q9GZY0 626 aaKnown RBP13.72□□□□□ -0.21
PTPRF-206ENST00000429895 TRAV1-2A0A0B4J238 106 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 MPZL1O95297 269 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 TMEM215Q68D42 235 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 YIPF6Q96EC8 236 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 MSL2Q9HCI7 577 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 hADV38S2A0JD32 116 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 HSBP1O75506 76 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 LPAR2Q9HBW0 351 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 UFC1Q9Y3C8 167 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 F2RL2O00254 374 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 TOX3O15405 576 aaPredicted RBP13.71□□□□□ -0.21
PTPRF-206ENST00000429895 CD200P41217 278 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 PRICKLE4Q2TBC4 344 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 RAB1CQ92928 201 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 TMEM18Q96B42 140 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 RSRP1Q9BUV0 290 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 CXXC4Q9H2H0 198 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 DNAJB12Q9NXW2 375 aaKnown RBP13.71□□□□□ -0.21
PTPRF-206ENST00000429895 RNF24Q9Y225 148 aa13.71□□□□□ -0.21
PTPRF-206ENST00000429895 ANKRD36CQ5JPF3 1778 aa13.71□□□□□ -0.22
PTPRF-206ENST00000429895 M0R296 226 aa13.71□□□□□ -0.22
PTPRF-206ENST00000429895 OR3A1P47881 315 aa13.71□□□□□ -0.22
PTPRF-206ENST00000429895 RAB7AP51149 207 aa13.71□□□□□ -0.22
PTPRF-206ENST00000429895 PJVKQ0ZLH3 352 aa13.71□□□□□ -0.22
PTPRF-206ENST00000429895 INSL4Q14641 139 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms