RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 RAP2BP61225 183 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 MC2RQ01718 297 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 ZNF92Q03936 586 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 ABHD17BQ5VST6 288 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 MOB3CQ70IA8 216 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 WDR5BQ86VZ2 330 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 SULF2Q8IWU5 870 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 SLC22A24Q8N4F4 322 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 C12orf45Q8N5I9 185 aaPredicted RBP7.3□□□□□ -1.24
CD44-208ENST00000428726 ZBTB8AQ96BR9 441 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 WBP1Q96G27 269 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 HDGFL3Q9Y3E1 203 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 INTS1Q8N201 2190 aaKnown RBP7.3□□□□□ -1.24
CD44-208ENST00000428726 BSNQ9UPA5 3926 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 IGKV1-27A0A075B6S5 117 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 LOC102723996A0A087X1L8 192 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 A0A0B4J2A0 478 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 ZNF850A8MQ14 1090 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 GEMIN2O14893 280 aaKnown RBP7.3□□□□□ -1.24
CD44-208ENST00000428726 CDC14BO60729 498 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 OR2A4O95047 310 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 RAB6AP20340 208 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 PLA2G5P39877 138 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 PSG4Q00888 419 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 OR1C1Q15619 314 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 SLC36A1Q7Z2H8 476 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 SLC51BQ86UW2 128 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 FADS6Q8N9I5 356 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 TMEM229BQ8NBD8 167 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 CPEB3Q8NE35 698 aaKnown RBP7.3□□□□□ -1.24
CD44-208ENST00000428726 OR52H1Q8NGJ2 320 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 OR6X1Q8NH79 312 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 NEK7Q8TDX7 302 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 PPP1R1CQ8WVI7 109 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 OR2A7Q96R45 310 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 PIGQQ9BRB3 760 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 EDEM2Q9BV94 578 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 PLEKHJ1Q9NW61 149 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 SHPKQ9UHJ6 478 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 MCTS1Q9ULC4 181 aaKnown RBP7.3□□□□□ -1.24
CD44-208ENST00000428726 FLVCR1Q9Y5Y0 555 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 DOCK11Q5JSL3 2073 aa7.3□□□□□ -1.24
CD44-208ENST00000428726 ARHGAP21Q5T5U3 1957 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 CACNA1BQ00975 2339 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 ABCA1O95477 2261 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 CBR3O75828 277 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 OR7C1O76099 320 aaPredicted RBP7.29□□□□□ -1.24
CD44-208ENST00000428726 DSCR4P56555 118 aaPredicted RBP7.29□□□□□ -1.24
CD44-208ENST00000428726 ZNF239Q16600 458 aaKnown RBP7.29□□□□□ -1.24
CD44-208ENST00000428726 ALKBH6Q3KRA9 238 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 ZNF260Q3ZCT1 412 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 PABPC1L2AQ5JQF8 200 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 RAB12Q6IQ22 244 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 LYPD6Q86Y78 171 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 CDH26Q8IXH8 852 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 GTPBP8Q8N3Z3 284 aaPredicted RBP7.29□□□□□ -1.24
CD44-208ENST00000428726 BPIFCQ8NFQ6 507 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 OR5T2Q8NGG2 359 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 OR10R2Q8NGX6 335 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 VRK1Q99986 396 aaPredicted RBP7.29□□□□□ -1.24
CD44-208ENST00000428726 MOB1AQ9H8S9 216 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 UPB1Q9UBR1 384 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 ZNF107Q9UII5 783 aaPredicted RBP7.29□□□□□ -1.24
CD44-208ENST00000428726 SH3BGRL2Q9UJC5 107 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 TNRC6BQ9UPQ9 1833 aaKnown RBP7.29□□□□□ -1.24
CD44-208ENST00000428726 LOC102725191A0A1B0GVB3 256 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 OR5H14A6NHG9 310 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 DHRS7CA6NNS2 312 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 ZNF705EA8MWA4 302 aaPredicted RBP7.29□□□□□ -1.24
CD44-208ENST00000428726 FARS2O95363 451 aaKnown RBP7.29□□□□□ -1.24
CD44-208ENST00000428726 CSTBP04080 98 aaKnown RBP7.29□□□□□ -1.24
CD44-208ENST00000428726 SERPINA5P05154 406 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 MELTFP08582 738 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 TDGF1P13385 188 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 CBR1P16152 277 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 ERVS71-1P61550 626 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 ARF1P84077 181 aaKnown RBP7.29□□□□□ -1.24
CD44-208ENST00000428726 IKZF1Q13422 519 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 TRA2AQ13595 282 aaKnown RBP eCLIP7.29□□□□□ -1.24
CD44-208ENST00000428726 GUCA2BQ16661 112 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 RNFT1Q5M7Z0 435 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 FAM53AQ6NSI3 398 aaPredicted RBP7.29□□□□□ -1.24
CD44-208ENST00000428726 CALHM1Q8IU99 346 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 SUMF1Q8NBK3 374 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 OR51F2Q8NH61 342 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 ALX4Q9H161 411 aaPredicted RBP7.29□□□□□ -1.24
CD44-208ENST00000428726 METTL8Q9H825 291 aaKnown RBP7.29□□□□□ -1.24
CD44-208ENST00000428726 PRSS50Q9UI38 385 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 RAB22AQ9UL26 194 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 NOSIPQ9Y314 301 aaKnown RBP7.29□□□□□ -1.24
CD44-208ENST00000428726 FAM96BQ9Y3D0 163 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 RFNGQ9Y644 331 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 KIAA1549Q9HCM3 1950 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 PCSK5Q92824 1860 aa7.29□□□□□ -1.24
CD44-208ENST00000428726 A0A087WZY1 265 aa7.28□□□□□ -1.24
CD44-208ENST00000428726 TRAV14DV4A0A0A6YYC5 116 aa7.28□□□□□ -1.24
CD44-208ENST00000428726 MRPL33O75394 65 aaKnown RBP7.28□□□□□ -1.24
CD44-208ENST00000428726 IGHV3-13P01766 116 aa7.28□□□□□ -1.24
CD44-208ENST00000428726 IGHV3-7P01780 117 aa7.28□□□□□ -1.24
CD44-208ENST00000428726 ZNF735P0CB33 412 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms