RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 POLR1DQ9Y2S0 133 aa8.6□□□□□ -1.03
SS18-203ENST00000415083 G3V3Y1 287 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 FCGR2AP12318 317 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 HOXA1P49639 335 aaPredicted RBP8.59□□□□□ -1.03
SS18-203ENST00000415083 FHITP49789 147 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 TSPO2Q5TGU0 170 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 ZNF468Q5VIY5 522 aaPredicted RBP8.59□□□□□ -1.03
SS18-203ENST00000415083 SPAG16Q8N0X2 631 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 EMG1Q92979 244 aaKnown RBP8.59□□□□□ -1.03
SS18-203ENST00000415083 ARL11Q969Q4 196 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 CDC6Q99741 560 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 FAAP24Q9BTP7 215 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 ZNF576Q9H609 170 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 FBXL17Q9UF56 701 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 CRYM-AS1A6NIL9 109 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 ZNHIT1O43257 154 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 SPRY1O43609 319 aaPredicted RBP8.59□□□□□ -1.03
SS18-203ENST00000415083 DEDDO75618 318 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 DHRS3O75911 302 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 UMODP07911 640 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 SFTA3P0C7M3 94 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 CCL3P10147 92 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 CRYGSP22914 178 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 SULT1A2P50226 295 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 ARFRP1Q13795 201 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 HABP2Q14520 560 aaPredicted RBP8.59□□□□□ -1.03
SS18-203ENST00000415083 SP6Q3SY56 376 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 SLC16A13Q7RTY0 426 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 NANPQ8TBE9 248 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 HAS2Q92819 552 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 ZNF2Q9BSG1 426 aaPredicted RBP8.59□□□□□ -1.03
SS18-203ENST00000415083 ARV1Q9H2C2 271 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 SH2D2AQ9NP31 389 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 CACFD1Q9UGQ2 172 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 PIGLQ9Y2B2 252 aa8.59□□□□□ -1.03
SS18-203ENST00000415083 A0A0G2JMM0 328 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 A0A0U1RQV5 110 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 A0A1W2PPB8 328 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 A0A1W2PRS3 328 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 KIR3DP1A8MWS1 328 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 K7ESF4 209 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 HEXAP06865 529 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 MSX1P28360 303 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 ACTBL2Q562R1 376 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 TRIM61Q5EBN2 209 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 GGNBP1Q5YKI7 109 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 RBMS3Q6XE24 437 aaKnown RBP8.58□□□□□ -1.04
SS18-203ENST00000415083 IL34Q6ZMJ4 242 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 GLYATL2Q8WU03 294 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 GPER1Q99527 375 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 SULT4A1Q9BR01 284 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 IFT22Q9H7X7 185 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 GPR173Q9NS66 373 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 CRIM1Q9NZV1 1036 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 AK3Q9UIJ7 227 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 A0A1W2PPE3 182 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 RNASEK-C17orf49H0YIS7 233 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 RRP8O43159 456 aaKnown RBP8.58□□□□□ -1.04
SS18-203ENST00000415083 PATE4P0C8F1 98 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 GABRR1P24046 479 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 F2RL1P55085 397 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 S100A10P60903 97 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 SNRPEP62304 92 aaKnown RBP8.58□□□□□ -1.04
SS18-203ENST00000415083 LSM6P62312 80 aaKnown RBP8.58□□□□□ -1.04
SS18-203ENST00000415083 TMEM156Q8N614 296 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 PGAM5Q96HS1 289 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 NECAB3Q96P71 396 aaPredicted RBP8.58□□□□□ -1.04
SS18-203ENST00000415083 METTL8Q9H825 291 aaKnown RBP8.58□□□□□ -1.04
SS18-203ENST00000415083 TAF9BQ9HBM6 251 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 SDHAF3Q9NRP4 125 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 DNAJB11Q9UBS4 358 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 EDARQ9UNE0 448 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 MED19A0JLT2 244 aaPredicted RBP8.58□□□□□ -1.04
SS18-203ENST00000415083 BCAT2O15382 392 aaPredicted RBP8.58□□□□□ -1.04
SS18-203ENST00000415083 FBXO24O75426 580 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 MBPP02686 304 aaPredicted RBP8.58□□□□□ -1.04
SS18-203ENST00000415083 SFTPBP07988 381 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 MEOX2P50222 304 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 TMEM33P57088 247 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 GRB2P62993 217 aaKnown RBP8.58□□□□□ -1.04
SS18-203ENST00000415083 CYCSP99999 105 aaKnown RBP8.58□□□□□ -1.04
SS18-203ENST00000415083 PDCD1Q15116 288 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 KRTAP27-1Q3LI81 207 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 ODF3L1Q8IXM7 274 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 SMIM3Q9BZL3 60 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 NELFAQ9H3P2 528 aa8.58□□□□□ -1.04
SS18-203ENST00000415083 CCDC187A0A096LP49 1063 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 ZFAND5O76080 213 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 GLI4P10075 376 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 OPRM1P35372 400 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 TMEM187Q14656 261 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 SWI5Q1ZZU3 235 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 SULF2Q8IWU5 870 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 OR52M1Q8NGK5 317 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 OR11L1Q8NGX0 322 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 REEP6Q96HR9 211 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 CCDC74BQ96LY2 380 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 EGLN1Q9GZT9 426 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 SH3BGRL3Q9H299 93 aa8.57□□□□□ -1.04
SS18-203ENST00000415083 C11orf1Q9H5F2 150 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms