RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 OR4F5Q8NH21 305 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 APOBEC3DQ96AK3 386 aaPredicted RBP6.51□□□□□ -1.37
SCN9A-202ENST00000409435 OR4F4Q96R69 305 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 PTGDR2Q9Y5Y4 395 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 GPRIN2O60269 458 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 CD37P11049 281 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 NID1P14543 1247 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 AREGP15514 252 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 SLC35A2P78381 396 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 PCLAFQ15004 111 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 OXA1LQ15070 435 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 P2RY14Q15391 338 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 DUSP5Q16690 384 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 XKR7Q5GH72 579 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 FAM209AQ5JX71 171 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 GPX8Q8TED1 209 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 SLC38A5Q8WUX1 472 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 DDOQ99489 341 aa6.51□□□□□ -1.37
SCN9A-202ENST00000409435 A0A1B0GWA3 101 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 DHHO43323 396 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 OR5AL1P0C617 328 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 IAH1Q2TAA2 248 aaPredicted RBP6.5□□□□□ -1.37
SCN9A-202ENST00000409435 CXorf67Q86X51 503 aaPredicted RBP6.5□□□□□ -1.37
SCN9A-202ENST00000409435 ANGPTL5Q86XS5 388 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 CNTN4Q8IWV2 1026 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 RNF113BQ8IZP6 322 aaKnown RBP6.5□□□□□ -1.37
SCN9A-202ENST00000409435 ASB13Q8WXK3 278 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 KHSRPQ92945 711 aaKnown RBP eCLIP6.5□□□□□ -1.378e-8■■■■□ 23.2
SCN9A-202ENST00000409435 SPAG8Q99932 426 aaPredicted RBP6.5□□□□□ -1.37
SCN9A-202ENST00000409435 SLC25A21Q9BQT8 299 aaPredicted RBP6.5□□□□□ -1.37
SCN9A-202ENST00000409435 SOX7Q9BT81 388 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 SLC17A3O00476 420 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 HSPB6O14558 160 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 YIF1AO95070 293 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 TK1P04183 234 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 SUCLG1P53597 346 aaKnown RBP6.5□□□□□ -1.37
SCN9A-202ENST00000409435 ELOBQ15370 118 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 ADGRG3Q86Y34 549 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 MUC15Q8N387 334 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 SLC16A11Q8NCK7 471 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 OR4K5Q8NGD3 323 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 OR2A5Q96R48 311 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 PLXNA1Q9UIW2 1896 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 TRBV5-4A0A0C4DH59 114 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 OR7C2O60412 319 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 LMX1BO60663 402 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 CLDN1O95832 211 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 MGMTP16455 207 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 HOXA4Q00056 320 aaPredicted RBP6.5□□□□□ -1.37
SCN9A-202ENST00000409435 MPPED2Q15777 294 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 SH2D5Q6ZV89 423 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 C6orf201Q7Z4U5 140 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 PACRGQ96M98 296 aaPredicted RBP6.5□□□□□ -1.37
SCN9A-202ENST00000409435 SIRT7Q9NRC8 400 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 ZNF835Q9Y2P0 537 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 SHISA8B8ZZ34 492 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 ZNF593O00488 134 aaPredicted RBP6.5□□□□□ -1.37
SCN9A-202ENST00000409435 GPX3P22352 226 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 GALNSP34059 522 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 SQSTM1Q13501 440 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 ZBTB37Q5TC79 503 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 ZNF343Q6P1L6 599 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 DMBX1Q8NFW5 382 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 OR2T27Q8NH04 317 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 RAB24Q969Q5 203 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 ADAT1Q9BUB4 502 aaKnown RBP6.5□□□□□ -1.37
SCN9A-202ENST00000409435 OR6C3Q9NZP0 311 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 HS3ST3B1Q9Y662 390 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 ATG2BQ96BY7 2078 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 CRYM-AS1A6NIL9 109 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 E5RGE8 158 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 SLC16A6O15403 523 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 PAPLNO95428 1278 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 FABP2P12104 132 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 GPM6AP51674 278 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 CCR9P51686 369 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 RAC3P60763 192 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 RPL27P61353 136 aaKnown RBP6.5□□□□□ -1.37
SCN9A-202ENST00000409435 CDONQ4KMG0 1287 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 TMEM268Q5VZI3 342 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 RNASEKQ6P5S7 137 aaKnown RBP6.5□□□□□ -1.37
SCN9A-202ENST00000409435 TMEM123Q8N131 208 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 KTI12Q96EK9 354 aaPredicted RBP6.5□□□□□ -1.37
SCN9A-202ENST00000409435 INPP5KQ9BT40 448 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 EGLN3Q9H6Z9 239 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 LPAR3Q9UBY5 353 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 MOKQ9UQ07 419 aa6.5□□□□□ -1.37
SCN9A-202ENST00000409435 SF3B6Q9Y3B4 125 aaKnown RBP6.5□□□□□ -1.37
SCN9A-202ENST00000409435 A0A1W2PNV4 684 aa6.49□□□□□ -1.37
SCN9A-202ENST00000409435 CDK2AP1O14519 115 aa6.49□□□□□ -1.37
SCN9A-202ENST00000409435 OR7C1O76099 320 aaPredicted RBP6.49□□□□□ -1.37
SCN9A-202ENST00000409435 SFTA3P0C7M3 94 aa6.49□□□□□ -1.37
SCN9A-202ENST00000409435 GNG10P50151 68 aa6.49□□□□□ -1.37
SCN9A-202ENST00000409435 PCOLCEQ15113 449 aa6.49□□□□□ -1.37
SCN9A-202ENST00000409435 SYT6Q5T7P8 510 aaPredicted RBP6.49□□□□□ -1.37
SCN9A-202ENST00000409435 LIMS2Q7Z4I7 341 aa6.49□□□□□ -1.37
SCN9A-202ENST00000409435 BPIFA4PQ86YQ2 179 aa6.49□□□□□ -1.37
SCN9A-202ENST00000409435 OR13C8Q8NGS7 320 aa6.49□□□□□ -1.37
SCN9A-202ENST00000409435 IL22RA2Q969J5 263 aa6.49□□□□□ -1.37
SCN9A-202ENST00000409435 MRPS24Q96EL2 167 aaKnown RBP6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms