RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 PBOV1Q9GZY1 135 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 ARV1Q9H2C2 271 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 RIMS4Q9H426 269 aaPredicted RBP10.62□□□□□ -0.71
HMGB1-206ENST00000405805 ALKBH4Q9NXW9 302 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 KLK13Q9UKR3 277 aa10.62□□□□□ -0.71
HMGB1-206ENST00000405805 ZNHIT1O43257 154 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 GUSBP08236 651 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 MTCP1P56278 107 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 RAP1BP61224 184 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 RPS4XP62701 263 aaKnown RBP10.61□□□□□ -0.71
HMGB1-206ENST00000405805 SAPCD1Q5SSQ6 148 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 OR5L1Q8NGL2 311 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 OR2I1PQ8NGU4 316 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 TM4SF19Q96DZ7 209 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 FOXJ2Q9P0K8 574 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 DKKL1Q9UK85 242 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 ICAM5Q9UMF0 924 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 IGHV3-64DA0A0J9YX35 117 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 DUX1O43812 170 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 MUC1P15941 1255 aaPredicted RBP10.61□□□□□ -0.71
HMGB1-206ENST00000405805 NTF3P20783 257 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 ID4P47928 161 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 BMPERQ8N8U9 685 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 OIT3Q8WWZ8 545 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 CORO2AQ92828 525 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 FAM210BQ96KR6 192 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 WFIKKN1Q96NZ8 548 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 GPR87Q9BY21 358 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 UBE2J1Q9Y385 318 aaPredicted RBP10.61□□□□□ -0.71
HMGB1-206ENST00000405805 TMEM184BQ9Y519 407 aaPredicted RBP10.61□□□□□ -0.71
HMGB1-206ENST00000405805 OR2J2O76002 312 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 CD82P27701 267 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 OR3A4PP47883 348 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 HNRNPKP61978 463 aaKnown RBP eCLIP10.61□□□□□ -0.71
HMGB1-206ENST00000405805 SGCBQ16585 318 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 RPL7L1Q6DKI1 246 aaKnown RBP10.61□□□□□ -0.71
HMGB1-206ENST00000405805 FAM58AQ8N1B3 248 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 TMEM229BQ8NBD8 167 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 PHYHIPLQ96FC7 376 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 MS4A10Q96PG2 267 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 NRIP2Q9BQI9 281 aa10.61□□□□□ -0.71
HMGB1-206ENST00000405805 GBF1Q92538 1859 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 SPTY2D1-AS1A0A0U1RR47 76 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 OR7C1O76099 320 aaPredicted RBP10.6□□□□□ -0.71
HMGB1-206ENST00000405805 CFIP05156 583 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 FAHP16930 419 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 RAB1AP62820 205 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 GABREP78334 506 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 PLXDC1Q8IUK5 500 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 SLC26A10Q8NG04 563 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 OR51F2Q8NH61 342 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 KCNG3Q8TAE7 436 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 GPX8Q8TED1 209 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 GABRG3Q99928 467 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 SLCO1B1Q9Y6L6 691 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 POLEQ07864 2286 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 HPP00738 406 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 IGHG1P01857 330 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 TRGC2P03986 189 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 SNCAP37840 140 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 OR3A1P47881 315 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 ZNF121P58317 390 aaPredicted RBP10.6□□□□□ -0.71
HMGB1-206ENST00000405805 EGR4Q05215 589 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 FOXF1Q12946 379 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 UNQ9370/PRO34162Q6UXP9 181 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 PARD6GQ9BYG4 376 aaPredicted RBP10.6□□□□□ -0.71
HMGB1-206ENST00000405805 OR10A2Q9H208 303 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 CLEC1BQ9P126 229 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 H3BMH7 237 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 LYPD3O95274 346 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 TAS2R31P59538 309 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 HSD11B2P80365 405 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 IKZF1Q13422 519 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 FZD2Q14332 565 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 PPA1Q15181 289 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 INPP5JQ15735 1006 aaPredicted RBP10.6□□□□□ -0.71
HMGB1-206ENST00000405805 TSPO2Q5TGU0 170 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 ADAT3Q96EY9 351 aaPredicted RBP10.6□□□□□ -0.71
HMGB1-206ENST00000405805 TP53RKQ96S44 253 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 ZNF2Q9BSG1 426 aaPredicted RBP10.6□□□□□ -0.71
HMGB1-206ENST00000405805 PRRG4Q9BZD6 226 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 ADAM19Q9H013 955 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 S1PR5Q9H228 398 aa10.6□□□□□ -0.71
HMGB1-206ENST00000405805 MRPS17Q9Y2R5 130 aaKnown RBP10.6□□□□□ -0.71
HMGB1-206ENST00000405805 H7BYZ3 331 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 RRP8O43159 456 aaKnown RBP10.59□□□□□ -0.71
HMGB1-206ENST00000405805 RCC1P18754 421 aaPredicted RBP10.59□□□□□ -0.71
HMGB1-206ENST00000405805 IL34Q6ZMJ4 242 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 MISPQ8IVT2 679 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 ST6GALNAC3Q8NDV1 305 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 REEP6Q96HR9 211 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 WDR13Q9H1Z4 485 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 DNAJC4Q9NNZ3 241 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 SMIM10L1P0DMW3 83 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 BCKDHBP21953 392 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 RPS4Y1P22090 263 aaKnown RBP10.59□□□□□ -0.71
HMGB1-206ENST00000405805 FCGR2CP31995 323 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 CAPZBP47756 277 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 SRYQ05066 204 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 EMC4Q5J8M3 183 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms