RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TRAPPC2LH3BP13 241 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 MYL12BO14950 172 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 SYNGR1O43759 233 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 NOS1APO75052 506 aaPredicted RBP18.08■□□□□ 0.49
CLN3-207ENST00000395653 LALBAP00709 142 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 CDK1P06493 297 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 GMFBP60983 142 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 RNLSQ5VYX0 342 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 STUMQ69YW2 141 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 IL17RELQ6ZVW7 336 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 CALHM1Q8IU99 346 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 POC1AQ8NBT0 407 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 TSEN15Q8WW01 171 aaKnown RBP18.08■□□□□ 0.49
CLN3-207ENST00000395653 MYDGFQ969H8 173 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 TMPRSS13Q9BYE2 586 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 DNTTIP1Q9H147 329 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 MMP26Q9NRE1 261 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 RASL12Q9NYN1 266 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 DHDHQ9UQ10 334 aa18.08■□□□□ 0.49
CLN3-207ENST00000395653 TMPRSS2O15393 492 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 ACAA1P09110 424 aaPredicted RBP18.07■□□□□ 0.48
CLN3-207ENST00000395653 PGA5P0DJD9 388 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 ATF1P18846 271 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 PRKACBP22694 351 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 RBP2P50120 134 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 WNT4P56705 351 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 TAS2R43P59537 309 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 PAX2Q02962 417 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 IL24Q13007 206 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 ATPAF1Q5TC12 328 aaPredicted RBP18.07■□□□□ 0.48
CLN3-207ENST00000395653 SLC36A1Q7Z2H8 476 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 TEX29Q8N6K0 151 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 RGP1Q92546 391 aaPredicted RBP18.07■□□□□ 0.48
CLN3-207ENST00000395653 SPSB1Q96BD6 273 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 TMIGD2Q96BF3 282 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 NLKQ9UBE8 527 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 ERGIC3Q9Y282 383 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 TPRKBQ9Y3C4 175 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 INSIG2Q9Y5U4 225 aa18.07■□□□□ 0.48
CLN3-207ENST00000395653 SIRT4Q9Y6E7 314 aaPredicted RBP18.07■□□□□ 0.48
CLN3-207ENST00000395653 IGKV1-27A0A075B6S5 117 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 PTGES3LE9PB15 166 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 MT-ND2P03891 347 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 SRD5A1P18405 259 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 AZGP1P25311 298 aaKnown RBP18.06■□□□□ 0.48
CLN3-207ENST00000395653 SLC35A2P78381 396 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 DMKNQ6E0U4 476 aaPredicted RBP18.06■□□□□ 0.48
CLN3-207ENST00000395653 ANGPTL5Q86XS5 388 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 SERPINA12Q8IW75 414 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 PARP16Q8N5Y8 322 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 NANOGP1Q8N7R0 232 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 OR13C9Q8NGT0 318 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 GPR148Q8TDV2 347 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 DACT3Q96B18 629 aaPredicted RBP18.06■□□□□ 0.48
CLN3-207ENST00000395653 CCL13Q99616 98 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 SNTG1Q9NSN8 517 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 ZNF281Q9Y2X9 895 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 JMJD1CQ15652 2540 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 ALX3O95076 343 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 ATP1B3P54709 279 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 C11orf91Q3C1V1 193 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 LHFPL2Q6ZUX7 228 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 OR5T2Q8NGG2 359 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 OR5D14Q8NGL3 314 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 ANGPTL6Q8NI99 470 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 RAB40AQ8WXH6 277 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 OPALINQ96PE5 141 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 NRIP2Q9BQI9 281 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 CDCA4Q9BXL8 241 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 DUSP21Q9H596 190 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 ZCCHC4Q9H5U6 513 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 C7orf69Q9H7B7 122 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 NEK6Q9HC98 313 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 SMURF1Q9HCE7 757 aa18.06■□□□□ 0.48
CLN3-207ENST00000395653 IGHV2-70DA0A0C4DH43 119 aa18.05■□□□□ 0.48
CLN3-207ENST00000395653 OR2AT4A6NND4 320 aa18.05■□□□□ 0.48
CLN3-207ENST00000395653 DVL1O14640 695 aa18.05■□□□□ 0.48
CLN3-207ENST00000395653 OCM2P0CE71 109 aa18.05■□□□□ 0.48
CLN3-207ENST00000395653 OCMP0CE72 109 aaPredicted RBP18.05■□□□□ 0.48
CLN3-207ENST00000395653 AMY2BP19961 511 aa18.05■□□□□ 0.48
CLN3-207ENST00000395653 SRP14P37108 136 aaKnown RBP18.05■□□□□ 0.48
CLN3-207ENST00000395653 SMIM21Q3B7S5 101 aa18.05■□□□□ 0.48
CLN3-207ENST00000395653 CD276Q5ZPR3 534 aa18.05■□□□□ 0.48
CLN3-207ENST00000395653 ACP7Q6ZNF0 438 aa18.05■□□□□ 0.48
CLN3-207ENST00000395653 ZNF788Q6ZQV5 615 aa18.05■□□□□ 0.48
CLN3-207ENST00000395653 C1orf229Q6ZS94 237 aaPredicted RBP18.05■□□□□ 0.48
CLN3-207ENST00000395653 CNBD2Q96M20 576 aa18.05■□□□□ 0.48
CLN3-207ENST00000395653 ZNF488Q96MN9 340 aa18.05■□□□□ 0.48
CLN3-207ENST00000395653 ZNF184Q99676 751 aaPredicted RBP18.05■□□□□ 0.48
CLN3-207ENST00000395653 MND1Q9BWT6 205 aa18.05■□□□□ 0.48
CLN3-207ENST00000395653 PAK1IP1Q9NWT1 392 aaPredicted RBP18.05■□□□□ 0.48
CLN3-207ENST00000395653 PCDHGB5Q9Y5G0 923 aa18.05■□□□□ 0.48
CLN3-207ENST00000395653 ARHGAP32A7KAX9 2087 aa18.04■□□□□ 0.48
CLN3-207ENST00000395653 LOC105371242A0A075B767 164 aa18.04■□□□□ 0.48
CLN3-207ENST00000395653 NKX6-3A6NJ46 265 aa18.04■□□□□ 0.48
CLN3-207ENST00000395653 AVPP01185 164 aa18.04■□□□□ 0.48
CLN3-207ENST00000395653 CD2P06729 351 aa18.04■□□□□ 0.48
CLN3-207ENST00000395653 MTCP1P56278 107 aa18.04■□□□□ 0.48
CLN3-207ENST00000395653 ERVK11-1P61568 191 aa18.04■□□□□ 0.48
CLN3-207ENST00000395653 BTNL3Q6UXE8 466 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms