RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 ZDHHC22Q8N966 263 aa21.71■■□□□ 1.07
SHOX2-201ENST00000389589 MGAT4CQ9UBM8 478 aa21.71■■□□□ 1.07
SHOX2-201ENST00000389589 DKK4Q9UBT3 224 aa21.71■■□□□ 1.07
SHOX2-201ENST00000389589 IGKV1-12A0A0C4DH73 117 aa21.7■■□□□ 1.06
SHOX2-201ENST00000389589 IGKV1D-12P01611 117 aa21.7■■□□□ 1.06
SHOX2-201ENST00000389589 C4orf46Q504U0 113 aa21.7■■□□□ 1.06
SHOX2-201ENST00000389589 ATPAF1Q5TC12 328 aaPredicted RBP21.7■■□□□ 1.06
SHOX2-201ENST00000389589 OR52B4Q8NGK2 314 aa21.7■■□□□ 1.06
SHOX2-201ENST00000389589 DLL4Q9NR61 685 aa21.7■■□□□ 1.06
SHOX2-201ENST00000389589 MBD3L4A6NDZ8 208 aaPredicted RBP21.7■■□□□ 1.06
SHOX2-201ENST00000389589 MBD3L3A6NE82 208 aaPredicted RBP21.7■■□□□ 1.06
SHOX2-201ENST00000389589 MBD3L5A6NJ08 208 aaPredicted RBP21.7■■□□□ 1.06
SHOX2-201ENST00000389589 PMP2P02689 132 aa21.7■■□□□ 1.06
SHOX2-201ENST00000389589 IFITM2Q01629 132 aa21.7■■□□□ 1.06
SHOX2-201ENST00000389589 MICBQ29980 383 aa21.7■■□□□ 1.06
SHOX2-201ENST00000389589 SAXO1Q8IYX7 474 aa21.7■■□□□ 1.06
SHOX2-201ENST00000389589 ARRDC1Q8N5I2 433 aa21.7■■□□□ 1.06
SHOX2-201ENST00000389589 MBD3L2Q8NHZ7 208 aaPredicted RBP21.7■■□□□ 1.06
SHOX2-201ENST00000389589 GPR137Q96N19 417 aa21.7■■□□□ 1.06
SHOX2-201ENST00000389589 HIST1H2AAQ96QV6 131 aa21.7■■□□□ 1.06
SHOX2-201ENST00000389589 LHX6Q9UPM6 363 aa21.7■■□□□ 1.06
SHOX2-201ENST00000389589 SLC34A2O95436 690 aa21.69■■□□□ 1.06
SHOX2-201ENST00000389589 SPINK2P20155 84 aa21.69■■□□□ 1.06
SHOX2-201ENST00000389589 HOXC12P31275 282 aa21.69■■□□□ 1.06
SHOX2-201ENST00000389589 RFPL4BQ6ZWI9 263 aa21.69■■□□□ 1.06
SHOX2-201ENST00000389589 ZNF611Q8N823 705 aa21.69■■□□□ 1.06
SHOX2-201ENST00000389589 OR5A2Q8NGI9 324 aa21.69■■□□□ 1.06
SHOX2-201ENST00000389589 ZNF431Q8TF32 576 aaPredicted RBP21.69■■□□□ 1.06
SHOX2-201ENST00000389589 SCNM1Q9BWG6 230 aa21.69■■□□□ 1.06
SHOX2-201ENST00000389589 CHST6Q9GZX3 395 aa21.69■■□□□ 1.06
SHOX2-201ENST00000389589 MPC1Q9Y5U8 109 aa21.69■■□□□ 1.06
SHOX2-201ENST00000389589 ANKRD30BLA7E2S9 258 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 RGS13O14921 159 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 OR4E1P0C645 316 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 AMY2BP19961 511 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 TAS2R46P59540 309 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 TAF9Q16594 264 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 C6orf201Q7Z4U5 140 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 CALHM1Q8IU99 346 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 OR5H2Q8NGV7 314 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 CDH20Q9HBT6 801 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 ASPMQ8IZT6 3477 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 CRHP06850 196 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 PTGER4P35408 488 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 PER3P56645 1201 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 NHLH1Q02575 133 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 PLEKHN1Q494U1 663 aaPredicted RBP21.68■■□□□ 1.06
SHOX2-201ENST00000389589 NKAPLQ5M9Q1 402 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 TMED4Q7Z7H5 227 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 MUC20Q8N307 709 aaPredicted RBP21.68■■□□□ 1.06
SHOX2-201ENST00000389589 HPSE2Q8WWQ2 592 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 PROCRQ9UNN8 238 aa21.68■■□□□ 1.06
SHOX2-201ENST00000389589 PRRC2CQ9Y520 2896 aaKnown RBP21.67■■□□□ 1.06
SHOX2-201ENST00000389589 CUL9Q8IWT3 2517 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 FOXF2Q12947 444 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 SIGIRRQ6IA17 410 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 SLC25A26Q70HW3 274 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 NLRC3Q7RTR2 1065 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 FBXL14Q8N1E6 418 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 Q8NFD4 153 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 EMG1Q92979 244 aaKnown RBP21.67■■□□□ 1.06
SHOX2-201ENST00000389589 ST6GALNAC5Q9BVH7 336 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 INTS1Q8N201 2190 aaKnown RBP21.67■■□□□ 1.06
SHOX2-201ENST00000389589 FIGNL2A6NMB9 653 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 K7EM74 188 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 WDR1O75083 606 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 TPOP07202 933 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 SFTPBP07988 381 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 GIPP09681 153 aaPredicted RBP21.67■■□□□ 1.06
SHOX2-201ENST00000389589 CBR1P16152 277 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 SNU13P55769 128 aaKnown RBP21.67■■□□□ 1.06
SHOX2-201ENST00000389589 EIF2S3LQ2VIR3 472 aaKnown RBP21.67■■□□□ 1.06
SHOX2-201ENST00000389589 TMEM246Q9BRR3 403 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 PLSCR3Q9NRY6 295 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 ST3GAL6Q9Y274 331 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 VSIG4Q9Y279 399 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 BOLA1Q9Y3E2 137 aa21.67■■□□□ 1.06
SHOX2-201ENST00000389589 TNFSF13O75888 250 aa21.66■■□□□ 1.06
SHOX2-201ENST00000389589 CHATP28329 748 aa21.66■■□□□ 1.06
SHOX2-201ENST00000389589 IDH3GP51553 393 aaPredicted RBP21.66■■□□□ 1.06
SHOX2-201ENST00000389589 GPM6AP51674 278 aa21.66■■□□□ 1.06
SHOX2-201ENST00000389589 KRTCAP3Q53RY4 240 aa21.66■■□□□ 1.06
SHOX2-201ENST00000389589 FBXW12Q6X9E4 464 aa21.66■■□□□ 1.06
SHOX2-201ENST00000389589 TMEM200AQ86VY9 491 aa21.66■■□□□ 1.06
SHOX2-201ENST00000389589 CRIM1Q9NZV1 1036 aa21.66■■□□□ 1.06
SHOX2-201ENST00000389589 SVILO95425 2214 aa21.65■■□□□ 1.06
SHOX2-201ENST00000389589 FRYQ5TBA9 3013 aa21.65■■□□□ 1.06
SHOX2-201ENST00000389589 H3BUI4 141 aa21.65■■□□□ 1.06
SHOX2-201ENST00000389589 OR3A3P47888 321 aa21.65■■□□□ 1.06
SHOX2-201ENST00000389589 SLC25A42Q86VD7 318 aa21.65■■□□□ 1.06
SHOX2-201ENST00000389589 TMEM17Q86X19 198 aa21.65■■□□□ 1.06
SHOX2-201ENST00000389589 C17orf78Q8N4C9 275 aa21.65■■□□□ 1.06
SHOX2-201ENST00000389589 NAXEQ8NCW5 288 aa21.65■■□□□ 1.06
SHOX2-201ENST00000389589 OR2AK2Q8NG84 335 aa21.65■■□□□ 1.06
SHOX2-201ENST00000389589 TERB2Q8NHR7 220 aa21.65■■□□□ 1.06
SHOX2-201ENST00000389589 MRGPRFQ96AM1 343 aa21.65■■□□□ 1.06
SHOX2-201ENST00000389589 A0A1W2PR80 420 aa21.65■■□□□ 1.06
SHOX2-201ENST00000389589 ZNF732B4DXR9 585 aa21.65■■□□□ 1.06
SHOX2-201ENST00000389589 OR2A4O95047 310 aa21.65■■□□□ 1.06
SHOX2-201ENST00000389589 CELA3BP08861 270 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms