RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 F5H5K5 113 aa8.78□□□□□ -1
VPS53-202ENST00000389040 FABP7O15540 132 aa8.78□□□□□ -1
VPS53-202ENST00000389040 IGLV3-1P01715 115 aa8.78□□□□□ -1
VPS53-202ENST00000389040 HLA-HP01893 362 aa8.78□□□□□ -1
VPS53-202ENST00000389040 ZNF14P17017 642 aaPredicted RBP8.78□□□□□ -1
VPS53-202ENST00000389040 TUBG1P23258 451 aa8.78□□□□□ -1
VPS53-202ENST00000389040 COL8A1P27658 744 aa8.78□□□□□ -1
VPS53-202ENST00000389040 RAD52P43351 418 aa8.78□□□□□ -1
VPS53-202ENST00000389040 SLC6A9P48067 706 aa8.78□□□□□ -1
VPS53-202ENST00000389040 MECP2P51608 486 aaKnown RBP8.78□□□□□ -1
VPS53-202ENST00000389040 TAS2R19P59542 299 aa8.78□□□□□ -1
VPS53-202ENST00000389040 QRFPP83859 136 aa8.78□□□□□ -1
VPS53-202ENST00000389040 RBMS2Q15434 407 aaKnown RBP8.78□□□□□ -1
VPS53-202ENST00000389040 AWAT2Q6E213 333 aa8.78□□□□□ -1
VPS53-202ENST00000389040 GLDNQ6ZMI3 551 aaPredicted RBP8.78□□□□□ -1
VPS53-202ENST00000389040 MDP1Q86V88 176 aa8.78□□□□□ -1
VPS53-202ENST00000389040 CDH26Q8IXH8 852 aa8.78□□□□□ -1
VPS53-202ENST00000389040 OR5AS1Q8N127 324 aa8.78□□□□□ -1
VPS53-202ENST00000389040 PAQR4Q8N4S7 273 aaPredicted RBP8.78□□□□□ -1
VPS53-202ENST00000389040 OR4D10Q8NGI6 311 aa8.78□□□□□ -1
VPS53-202ENST00000389040 OR14K1Q8NGZ2 314 aa8.78□□□□□ -1
VPS53-202ENST00000389040 FAM46BQ96A09 425 aa8.78□□□□□ -1
VPS53-202ENST00000389040 FBXO17Q96EF6 278 aa8.78□□□□□ -1
VPS53-202ENST00000389040 GINS4Q9BRT9 223 aa8.78□□□□□ -1
VPS53-202ENST00000389040 TUBG2Q9NRH3 451 aa8.78□□□□□ -1
VPS53-202ENST00000389040 FBLN5Q9UBX5 448 aa8.78□□□□□ -1
VPS53-202ENST00000389040 FBXO9Q9UK97 447 aaPredicted RBP8.78□□□□□ -1
VPS53-202ENST00000389040 SPTAN1Q13813 2472 aaKnown RBP8.78□□□□□ -1
VPS53-202ENST00000389040 A0A0U1RQV5 110 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 DPRXA6NFQ7 191 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 APOC1P02654 83 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 CD3DP04234 171 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 GSTT2P0CG29 244 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 VSIG8P0DPA2 414 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 ANXA7P20073 488 aaKnown RBP8.77□□□□□ -1.01
VPS53-202ENST00000389040 OTX1P32242 354 aaPredicted RBP8.77□□□□□ -1.01
VPS53-202ENST00000389040 BSPH1Q075Z2 132 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 SNTB1Q13884 538 aaKnown RBP8.77□□□□□ -1.01
VPS53-202ENST00000389040 NDUFA5Q16718 116 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 Q5BKY6 102 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 STEAP1BQ6NZ63 245 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 NAA40Q86UY6 237 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 ANGPTL5Q86XS5 388 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 OR8S1Q8NH09 359 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 AQP3Q92482 292 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 SPTSSAQ969W0 71 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 MED30Q96HR3 178 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 OR2H1Q9GZK4 316 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 CLEC4MQ9H2X3 399 aaPredicted RBP8.77□□□□□ -1.01
VPS53-202ENST00000389040 SLA2Q9H6Q3 261 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 PLEK2Q9NYT0 353 aa8.77□□□□□ -1.01
VPS53-202ENST00000389040 IGHV1-18A0A0C4DH31 117 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 C5orf63A6NC05 138 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 J3QW42 95 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 M0R135 149 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 M0R1B8 84 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 RAB27BO00194 218 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 SCGNO76038 276 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 IL5P05113 134 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 HCKP08631 526 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 ZNF32P17041 273 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 LOXP28300 417 aaPredicted RBP8.76□□□□□ -1.01
VPS53-202ENST00000389040 ZNF83P51522 516 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 ZP1P60852 638 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 RAB35Q15286 201 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 TBC1D28Q2M2D7 210 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 RSPO1Q2MKA7 263 aaPredicted RBP8.76□□□□□ -1.01
VPS53-202ENST00000389040 Q6ZTK2 550 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 TMEM229BQ8NBD8 167 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 NUP37Q8NFH4 326 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 OR51S1Q8NGJ8 323 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 DVL3Q92997 716 aaPredicted RBP8.76□□□□□ -1.01
VPS53-202ENST00000389040 PIK3IP1Q96FE7 263 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 ZNF799Q96GE5 643 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 LYZL4Q96KX0 146 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 NUDT16L1Q9BRJ7 211 aaKnown RBP8.76□□□□□ -1.01
VPS53-202ENST00000389040 SEC22CQ9BRL7 303 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 RANBP3Q9H6Z4 567 aaPredicted RBP8.76□□□□□ -1.01
VPS53-202ENST00000389040 ZMAT3Q9HA38 289 aaKnown RBP8.76□□□□□ -1.01
VPS53-202ENST00000389040 GPN1Q9HCN4 374 aaPredicted RBP8.76□□□□□ -1.01
VPS53-202ENST00000389040 ZNF107Q9UII5 783 aaPredicted RBP8.76□□□□□ -1.01
VPS53-202ENST00000389040 NPTNQ9Y639 398 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 ICE1Q9Y2F5 2266 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 OR6C6A6NF89 314 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 TMEM235A6NFC5 223 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 SNRPGP15A8MWD9 76 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 TMEM14DPA8MWL7 114 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 ABCD4O14678 606 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 SGCEO43556 437 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 CREBL2O60519 120 aaPredicted RBP8.76□□□□□ -1.01
VPS53-202ENST00000389040 DHRS3O75911 302 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 CYB5AP00167 134 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 FCER2P06734 321 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 DBHP09172 617 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 CECR9P0C854 216 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 ZNF35P13682 527 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 APLNRP35414 380 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 THBS4P35443 961 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 GSK3AP49840 483 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 PSG4Q00888 419 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms