RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 OR4C16Q8NGL9 310 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 PP6455Q8WZ26 134 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 ZBTB42B2RXF5 422 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 SPRY3O43610 288 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 ZGLP1P0C6A0 271 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 GCSHP23434 173 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 TMEM128Q5BJH2 165 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 PARM1Q6UWI2 310 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 TIPARPQ7Z3E1 657 aaKnown RBP11.23□□□□□ -0.61
VPS13A-204ENST00000376634 H0Y8X5 98 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 CLEC12BQ2HXU8 276 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 SLC16A12Q6ZSM3 486 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 PRSS3P2Q8NHM4 247 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 ZDHHC5Q9C0B5 715 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 C20orf141Q9NUB4 165 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 THYN1Q9P016 225 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 PYCR3Q53H96 274 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 LDLRAD1Q5T700 205 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 ZNF788Q6ZQV5 615 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 GALNT16Q8N428 558 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 SPNS1Q9H2V7 528 aa11.23□□□□□ -0.61
VPS13A-204ENST00000376634 COL22A1Q8NFW1 1626 aaPredicted RBP11.22□□□□□ -0.61
VPS13A-204ENST00000376634 LSM11P83369 360 aaKnown RBP eCLIP11.22□□□□□ -0.61
VPS13A-204ENST00000376634 FCN1O00602 326 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 LY86O95711 162 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 CLDN20P56880 219 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 OLIG3Q7RTU3 272 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 NKAIN4Q8IVV8 208 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 OR5R1Q8NH85 324 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 ISL2Q96A47 359 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 IL36GQ9NZH8 169 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 ACSM6Q6P461 480 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 OR1B1Q8NGR6 318 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 OR1L1Q8NH94 360 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 OCEL1Q9H607 264 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 FUCA1P04066 466 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 CD3DP04234 171 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 DSCR4P56555 118 aaPredicted RBP11.22□□□□□ -0.61
VPS13A-204ENST00000376634 GPNMBQ14956 572 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 SPNS3Q6ZMD2 512 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 SHISA4Q96DD7 197 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 OR10C1Q96KK4 312 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 C6orf106Q9H6K1 298 aaPredicted RBP11.22□□□□□ -0.61
VPS13A-204ENST00000376634 CEACAM6P40199 344 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 GPR3P46089 330 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 PPICP45877 212 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 TNRC6CQ9HCJ0 1690 aaKnown RBP11.22□□□□□ -0.61
VPS13A-204ENST00000376634 ADAMTSL1Q8N6G6 1762 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 TMEM127O75204 238 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 GPANK1O95872 356 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 CRISP2P16562 243 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 CSF2RBP32927 897 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 OR3A1P47881 315 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 ATG101Q9BSB4 218 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 HINT3Q9NQE9 182 aaKnown RBP11.22□□□□□ -0.61
VPS13A-204ENST00000376634 EMDP50402 254 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 AANATQ16613 207 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 GSG1Q2KHT4 349 aa11.22□□□□□ -0.61
VPS13A-204ENST00000376634 MRPL37Q9BZE1 423 aaKnown RBP11.22□□□□□ -0.61
VPS13A-204ENST00000376634 TRAV1-2A0A0B4J238 106 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 CDX4O14627 284 aaPredicted RBP11.21□□□□□ -0.61
VPS13A-204ENST00000376634 ZBTB37Q5TC79 503 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 OR2G2Q8NGZ5 317 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 DOK1Q99704 481 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 SLC45A2Q9UMX9 530 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 PJVKQ0ZLH3 352 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 OR5M9Q8NGP3 310 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 DYRK2Q92630 601 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 MVB12AQ96EY5 273 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 AFMIDQ63HM1 303 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 CXorf67Q86X51 503 aaPredicted RBP11.21□□□□□ -0.61
VPS13A-204ENST00000376634 EXTL1Q92935 676 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 FBXO17Q96EF6 278 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 ZNF391Q9UJN7 358 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 SPRY1O43609 319 aaPredicted RBP11.21□□□□□ -0.61
VPS13A-204ENST00000376634 GNG10P50151 68 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 PCBP3P57721 371 aaKnown RBP11.21□□□□□ -0.61
VPS13A-204ENST00000376634 UBE2MP61081 183 aaKnown RBP11.21□□□□□ -0.61
VPS13A-204ENST00000376634 SMAD4Q13485 552 aaKnown RBP11.21□□□□□ -0.61
VPS13A-204ENST00000376634 PELI3Q8N2H9 469 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 LILRA3Q8N6C8 439 aaPredicted RBP11.21□□□□□ -0.61
VPS13A-204ENST00000376634 RNF167Q9H6Y7 350 aa11.21□□□□□ -0.61
VPS13A-204ENST00000376634 Q6ZNX1 250 aa11.21□□□□□ -0.62
VPS13A-204ENST00000376634 UBALD2Q8IYN6 164 aa11.21□□□□□ -0.62
VPS13A-204ENST00000376634 MARCH5Q9NX47 278 aa11.21□□□□□ -0.62
VPS13A-204ENST00000376634 SLCO1C1Q9NYB5 712 aa11.21□□□□□ -0.62
VPS13A-204ENST00000376634 FGF17O60258 216 aa11.21□□□□□ -0.62
VPS13A-204ENST00000376634 CBR3O75828 277 aa11.21□□□□□ -0.62
VPS13A-204ENST00000376634 SUMO3P55854 103 aaPredicted RBP11.21□□□□□ -0.62
VPS13A-204ENST00000376634 Q6ZSR9 355 aa11.21□□□□□ -0.62
VPS13A-204ENST00000376634 OR10D4PQ8NGN7 298 aa11.21□□□□□ -0.62
VPS13A-204ENST00000376634 MAP1LC3CQ9BXW4 147 aa11.21□□□□□ -0.62
VPS13A-204ENST00000376634 H3BP45 60 aa11.21□□□□□ -0.62
VPS13A-204ENST00000376634 HOXC11O43248 304 aaPredicted RBP11.21□□□□□ -0.62
VPS13A-204ENST00000376634 CST7O76096 145 aa11.21□□□□□ -0.62
VPS13A-204ENST00000376634 TGFBR1P36897 503 aa11.21□□□□□ -0.62
VPS13A-204ENST00000376634 FABP5Q01469 135 aa11.21□□□□□ -0.62
VPS13A-204ENST00000376634 DLEU7Q6UYE1 221 aa11.21□□□□□ -0.62
VPS13A-204ENST00000376634 BAP18Q8IXM2 172 aa11.21□□□□□ -0.62
VPS13A-204ENST00000376634 UBE2FQ969M7 185 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms