RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 C17orf98A8MV24 154 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 CLUP10909 449 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 ZNF3P17036 446 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 GSTT1P30711 240 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 PRDX2P32119 198 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 MAP2K3P46734 347 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 PSME3P61289 254 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 ZNF273Q14593 569 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 LINC01590Q5TEZ4 76 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 MINOS1Q5TGZ0 78 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 LCN8Q6JVE9 175 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 HAGHLQ6PII5 290 aaPredicted RBP11.11□□□□□ -0.63
VPS29-201ENST00000360579 Q6ZS46 218 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 CD177Q8N6Q3 437 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 POC1AQ8NBT0 407 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 OR8D4Q8NGM9 314 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 MYDGFQ969H8 173 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 TSSK6Q9BXA6 273 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 NIPAL2Q9H841 368 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 IL1RAPQ9NPH3 570 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 MINOS1-NBL1R4GNA1 71 aa11.11□□□□□ -0.63
VPS29-201ENST00000360579 DYNC2H1Q8NCM8 4307 aaKnown RBP11.1□□□□□ -0.63
VPS29-201ENST00000360579 CCDC22O60826 627 aa11.1□□□□□ -0.63
VPS29-201ENST00000360579 LYNP07948 512 aa11.1□□□□□ -0.63
VPS29-201ENST00000360579 HOXD3P31249 432 aaPredicted RBP11.1□□□□□ -0.63
VPS29-201ENST00000360579 PSMA6P60900 246 aaKnown RBP11.1□□□□□ -0.63
VPS29-201ENST00000360579 COL10A1Q03692 680 aa11.1□□□□□ -0.63
VPS29-201ENST00000360579 SLC34A1Q06495 639 aa11.1□□□□□ -0.63
VPS29-201ENST00000360579 DYNC1I2Q13409 638 aaKnown RBP11.1□□□□□ -0.63
VPS29-201ENST00000360579 KLHL22Q53GT1 634 aa11.1□□□□□ -0.63
VPS29-201ENST00000360579 CEP78Q5JTW2 689 aa11.1□□□□□ -0.63
VPS29-201ENST00000360579 ZNF770Q6IQ21 691 aaPredicted RBP11.1□□□□□ -0.63
VPS29-201ENST00000360579 CGB2Q6NT52 195 aa11.1□□□□□ -0.63
VPS29-201ENST00000360579 CAPSLQ8WWF8 208 aa11.1□□□□□ -0.63
VPS29-201ENST00000360579 LYZL4Q96KX0 146 aa11.1□□□□□ -0.63
VPS29-201ENST00000360579 MCRIP2Q9BUT9 160 aaKnown RBP11.1□□□□□ -0.63
VPS29-201ENST00000360579 MAGEL2Q9UJ55 1249 aa11.1□□□□□ -0.63
VPS29-201ENST00000360579 FAM90A22PA8MWA6 464 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 C3orf84H3BNL1 204 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 TK1P04183 234 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 ZNF728P0DKX0 622 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 ATP6V1B1P15313 513 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 HMGA2P52926 109 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 DLX6P56179 175 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 IL18R1Q13478 541 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 TCTEX1D4Q5JR98 221 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 KHDC1LQ5JSQ8 128 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 LCN1P1Q5VSP4 162 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 LINC00482Q8N8I6 264 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 OR9Q2Q8NGE9 314 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 OR51D1Q8NGF3 324 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 OR8B12Q8NGG6 310 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 AMELYQ99218 206 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 BTBD10Q9BSF8 475 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 CHID1Q9BWS9 393 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 CMC2Q9NRP2 79 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 POLDIP2Q9Y2S7 368 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 U3KQK5 164 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 RYR2Q92736 4967 aa11.09□□□□□ -0.63
VPS29-201ENST00000360579 A0A0U1RQV5 110 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 TNFRSF11BO00300 401 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 NOS1APO75052 506 aaPredicted RBP11.08□□□□□ -0.64
VPS29-201ENST00000360579 NXPH2O95156 264 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 PGA5P0DJD9 388 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 IGHV1-8P0DP01 117 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 PIPP12273 146 aaPredicted RBP11.08□□□□□ -0.64
VPS29-201ENST00000360579 RIPPLY1Q0D2K3 151 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 LINC01559Q495D7 138 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 LDLRAD2Q5SZI1 272 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 UNQ9370/PRO34162Q6UXP9 181 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 ZBTB49Q6ZSB9 765 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 RNF144BQ7Z419 303 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 ZNF573Q86YE8 665 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 OR4Q3Q8NH05 313 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 OTOSQ8NHW6 89 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 THEM6Q8WUY1 208 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 CMTM5Q96DZ9 223 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 NSMCE2Q96MF7 247 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 LIN7BQ9HAP6 207 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 HILPDAQ9Y5L2 63 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 LYVE1Q9Y5Y7 322 aa11.08□□□□□ -0.64
VPS29-201ENST00000360579 ACOD1A6NK06 481 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 J3QT63 122 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 K7N7A8 449 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 GSC2O15499 205 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 DNAJC8O75937 253 aaPredicted RBP11.07□□□□□ -0.64
VPS29-201ENST00000360579 CCNB2O95067 398 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 GASTP01350 101 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 LMO1P25800 156 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 PLCXD3Q63HM9 321 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 MOB3CQ70IA8 216 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 HDXQ7Z353 690 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 RNF148Q8N7C7 305 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 NDNFQ8TB73 568 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 OTULINQ96BN8 352 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 ZNF714Q96N38 554 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 OR8B4Q96RC9 309 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 OR14J1Q9UGF5 321 aa11.07□□□□□ -0.64
VPS29-201ENST00000360579 H2AFXP16104 143 aaPredicted RBP11.06□□□□□ -0.64
VPS29-201ENST00000360579 BRS3P32247 399 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms