RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 RFC3P40938 356 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 GSK3AP49840 483 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 SPEM2Q0P670 501 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 ECH1Q13011 328 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 PNLIPRP3Q17RR3 467 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 DHRS11Q6UWP2 260 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 C5orf24Q7Z6I8 188 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 ADAMTS17Q8TE56 1095 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 CNTNAP3Q9BZ76 1288 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 PLA2G2EQ9NZK7 142 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 TRBV6-7A0A0A0MS04 114 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 C10orf142B7Z368 130 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 CAV2P51636 162 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 NAAAQ02083 359 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 EIF5AL1Q6IS14 154 aaKnown RBP10.62□□□□□ -0.71
CLIP3-201ENST00000360535 SLC22A8Q8TCC7 542 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 CD300LFQ8TDQ1 290 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 AQP10Q96PS8 301 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 SEC11CQ9BY50 192 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 BIN3Q9NQY0 253 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 EDARQ9UNE0 448 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 RFNGQ9Y644 331 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 A0A1W2PNV4 684 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 IGHV3-9P01782 118 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 OR5AC1P0C628 307 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 OMGP23515 440 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 SUMO3P55854 103 aaPredicted RBP10.62□□□□□ -0.71
CLIP3-201ENST00000360535 GRB2P62993 217 aaKnown RBP10.62□□□□□ -0.71
CLIP3-201ENST00000360535 CCL7P80098 99 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 LYZL2Q7Z4W2 148 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 GJC3Q8NFK1 279 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 AKR7LQ8NHP1 331 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 SPACA9Q96E40 222 aaPredicted RBP10.62□□□□□ -0.71
CLIP3-201ENST00000360535 KIRREL1Q96J84 757 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 ULBP2Q9BZM5 246 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 CHRNA10Q9GZZ6 450 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 FREM1Q5H8C1 2179 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 MEX3AA1L020 520 aaKnown RBP10.61□□□□□ -0.71
CLIP3-201ENST00000360535 TNFSF11O14788 317 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 S100A6P06703 90 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 ZNF806P0C7X5 589 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 RPS2P15880 293 aaKnown RBP10.61□□□□□ -0.71
CLIP3-201ENST00000360535 AFF3P51826 1226 aaKnown RBP10.61□□□□□ -0.71
CLIP3-201ENST00000360535 PIGYQ3MUY2 71 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 MIDNQ504T8 468 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 DHRS7BQ6IAN0 325 aaPredicted RBP10.61□□□□□ -0.71
CLIP3-201ENST00000360535 LHFPL1Q86WI0 220 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 OR11L1Q8NGX0 322 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 PRRX2Q99811 253 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 LIME1Q9H400 295 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 RCL1Q9Y2P8 373 aaKnown RBP10.61□□□□□ -0.71
CLIP3-201ENST00000360535 FBXO7Q9Y3I1 522 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 DHRS3O75911 302 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 IL34Q6ZMJ4 242 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 SLC16A13Q7RTY0 426 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 SHDQ96IW2 340 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 OCIAD1Q9NX40 245 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 DNAJC13O75165 2243 aa10.61□□□□□ -0.71
CLIP3-201ENST00000360535 SRFP11831 508 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 ACKR3P25106 362 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 CAMLGP49069 296 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 TMEM156Q8N614 296 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 OR6S1Q8NH40 331 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 GLYATL2Q8WU03 294 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 AK3Q9UIJ7 227 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 CARHSP1Q9Y2V2 147 aaKnown RBP10.6□□□□□ -0.71
CLIP3-201ENST00000360535 HSPB6O14558 160 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 ARG1P05089 322 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 OR13C7P0DN81 318 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 CCL3P10147 92 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 CCNOP22674 350 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 MSX1P28360 303 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 EIF5AP63241 154 aaKnown RBP10.6□□□□□ -0.71
CLIP3-201ENST00000360535 SLC35A1P78382 337 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 CLINT1Q14677 625 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 ZNF528Q3MIS6 628 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 ZNF774Q6NX45 483 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 OR9K2Q8NGE7 335 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 NANPQ8TBE9 248 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 IP6K3Q96PC2 410 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 ALKBH3Q96Q83 286 aaPredicted RBP10.6□□□□□ -0.71
CLIP3-201ENST00000360535 RSRP1Q9BUV0 290 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 SH3BGRL3Q9H299 93 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 RGCCQ9H4X1 137 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 SPACA1Q9HBV2 294 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 DKKL1Q9UK85 242 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 A0A1W2PQM1 296 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 AQP7P3A6NL99 342 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 GEMIN2O14893 280 aaKnown RBP10.6□□□□□ -0.71
CLIP3-201ENST00000360535 NHLH2Q02577 135 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 C9orf135Q5VTT2 229 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 SLC22A25Q6T423 547 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 RTN4IP1Q8WWV3 396 aaPredicted RBP10.6□□□□□ -0.71
CLIP3-201ENST00000360535 SPSB2Q99619 263 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 NELFAQ9H3P2 528 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 WNT16Q9UBV4 365 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 KCNIP3Q9Y2W7 256 aa10.6□□□□□ -0.71
CLIP3-201ENST00000360535 ESPL1Q14674 2120 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 EXPH5Q8NEV8 1989 aa10.59□□□□□ -0.71
CLIP3-201ENST00000360535 TRAV20A0A0B4J274 112 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms