RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 HPNP05981 417 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 TESK1Q15569 626 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 C17orf107Q6ZR85 190 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 LYG2Q86SG7 212 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 NANPQ8TBE9 248 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 TAAR6Q96RI8 345 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 MPC1Q9Y5U8 109 aa13.16□□□□□ -0.3
COL17A1-201ENST00000353479 PTPRFP10586 1907 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 SLC38A6Q8IZM9 456 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 ZPLD1Q8TCW7 415 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 PRSS27Q9BQR3 290 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 TAF9BQ9HBM6 251 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 TREM2Q9NZC2 230 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 OR5B21A6NL26 309 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 CSRP3P50461 194 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 UBAC2Q8NBM4 344 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 OR2G3Q8NGZ4 309 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 ADIPOR1Q96A54 375 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 CMTM3Q96MX0 182 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 MAGT1Q9H0U3 335 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 HIF1ANQ9NWT6 349 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 CDX4O14627 284 aaPredicted RBP13.15□□□□□ -0.3
COL17A1-201ENST00000353479 TO15178 435 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 CTAG2O75638 210 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 TMPRSS3P57727 454 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 FBXW5Q969U6 566 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 ZDHHC16Q969W1 377 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 PARP12Q9H0J9 701 aaKnown RBP13.15□□□□□ -0.3
COL17A1-201ENST00000353479 KCNK15Q9H427 330 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 OSGIN2Q9Y236 505 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 CEACAM6P40199 344 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 DHODHQ02127 395 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 OR10AC1Q8NH08 325 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 RAB1BQ9H0U4 201 aa13.15□□□□□ -0.3
COL17A1-201ENST00000353479 ZIC2O95409 532 aaPredicted RBP13.14□□□□□ -0.31
COL17A1-201ENST00000353479 GABRA4P48169 554 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 ARV1Q9H2C2 271 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 M0R1X1 148 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 PTP4A3O75365 173 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 SFTPCP11686 197 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 PSMB6P28072 239 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 CALCRP30988 508 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 Q6ZRG5 221 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 A0A1B0GUH1 482 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 TGM6O95932 706 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 TSPO2Q5TGU0 170 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 AHCTF1Q8WYP5 2266 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 TUBAL3A6NHL2 446 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 GPR31O00270 319 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 UPK3AO75631 287 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 IGHA1P01876 353 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 ZBTB25P24278 435 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 C17orf78Q8N4C9 275 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 ARRDC1Q8N5I2 433 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 SLC52A3Q9NQ40 469 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 TINAGQ9UJW2 476 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 OR5H14A6NHG9 310 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 OGG1O15527 345 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 EFEMP2O95967 443 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 C1orf185Q5T7R7 199 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 CDCP2Q5VXM1 449 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 IL34Q6ZMJ4 242 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 SLC16A12Q6ZSM3 486 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 THNSL2Q86YJ6 484 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 TMPRSS13Q9BYE2 586 aa13.14□□□□□ -0.31
COL17A1-201ENST00000353479 PUS1Q9Y606 427 aaKnown RBP eCLIP13.14□□□□□ -0.31
COL17A1-201ENST00000353479 TMEM11P17152 192 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 ACP1P24666 158 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 SLC26A10Q8NG04 563 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 SPSB2Q99619 263 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 LOC101059948A0A1B0GTJ6 334 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 C16orf97H3BN30 126 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 PDCD6O75340 191 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 THBS3P49746 956 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 ERHP84090 104 aaKnown RBP13.13□□□□□ -0.31
COL17A1-201ENST00000353479 PCOLCEQ15113 449 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 ZFP62Q8NB50 900 aaPredicted RBP13.13□□□□□ -0.31
COL17A1-201ENST00000353479 PURGQ9UJV8 347 aaKnown RBP13.13□□□□□ -0.31
COL17A1-201ENST00000353479 PYCARD-AS1I3L0S3 204 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 LRRTM1Q86UE6 522 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 RNF32Q9H0A6 362 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 FABP1P07148 127 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 ASAH2BP0C7U1 165 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 TRAPPC2P0DI81 140 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 TRAPPC2BP0DI82 140 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 HLXQ14774 488 aaPredicted RBP13.13□□□□□ -0.31
COL17A1-201ENST00000353479 MOB1BQ7L9L4 216 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 MDP1Q86V88 176 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 UBTD1Q9HAC8 227 aa13.13□□□□□ -0.31
COL17A1-201ENST00000353479 ERRFI1Q9UJM3 462 aaPredicted RBP13.13□□□□□ -0.31
COL17A1-201ENST00000353479 IGHV3-43A0A0B4J1X8 118 aa13.12□□□□□ -0.31
COL17A1-201ENST00000353479 IGHV3-43DP0DP04 118 aa13.12□□□□□ -0.31
COL17A1-201ENST00000353479 TMEM182Q6ZP80 229 aaPredicted RBP13.12□□□□□ -0.31
COL17A1-201ENST00000353479 CDH26Q8IXH8 852 aa13.12□□□□□ -0.31
COL17A1-201ENST00000353479 OR6S1Q8NH40 331 aa13.12□□□□□ -0.31
COL17A1-201ENST00000353479 NUPL2O15504 423 aaKnown RBP13.12□□□□□ -0.31
COL17A1-201ENST00000353479 LIMK1P53667 647 aa13.12□□□□□ -0.31
COL17A1-201ENST00000353479 PXT1Q8NFP0 134 aa13.12□□□□□ -0.31
COL17A1-201ENST00000353479 OR10P1Q8NGE3 313 aa13.12□□□□□ -0.31
COL17A1-201ENST00000353479 SFT2D1Q8WV19 159 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms