RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 ACSM1Q08AH1 577 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 ESCO2Q56NI9 601 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 YIF1BQ5BJH7 314 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 NLRC3Q7RTR2 1065 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 PARP16Q8N5Y8 322 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 DNAAF1Q8NEP3 725 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 OR8B3Q8NGG8 313 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 OR5D14Q8NGL3 314 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 TMEM106AQ96A25 262 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 SPSB1Q96BD6 273 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 NEIL1Q96FI4 390 aaPredicted RBP13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 ZNF488Q96MN9 340 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 OPALINQ96PE5 141 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 OR8B2Q96RD0 313 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 SNTG1Q9NSN8 517 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 TAS2R4Q9NYW5 299 aa13.28□□□□□ -0.28
CCDC28A-201ENST00000332797 NSD1Q96L73 2696 aaPredicted RBP13.27□□□□□ -0.28
CCDC28A-201ENST00000332797 ADAM20O43506 726 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 SULT1B1O43704 296 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 HSMCR30P0CW71 290 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 MPZP25189 248 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 PITPNBP48739 271 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 POU3F4P49335 361 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 DVL1P1P54792 670 aaPredicted RBP13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 MTCP1P56278 107 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 RPS11P62280 158 aaKnown RBP eCLIP13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 LHFPL2Q6ZUX7 228 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 BATF2Q8N1L9 274 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 POC1AQ8NBT0 407 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 RFT1Q96AA3 541 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 TMEM186Q96B77 213 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 SPACA5Q96QH8 159 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 PKIBQ9C010 78 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 NEK6Q9HC98 313 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 HIF1ANQ9NWT6 349 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 LRCH1Q9Y2L9 728 aa13.27□□□□□ -0.29
CCDC28A-201ENST00000332797 TRAV20A0A0B4J274 112 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 TRBV5-5A0A0J9YX44 114 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 PHF1O43189 567 aaPredicted RBP13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 NDUFA2O43678 99 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 FOXH1O75593 365 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 INMTO95050 263 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 CD1AP06126 327 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 HCKP08631 526 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 PGA5P0DJD9 388 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 ZFP36P26651 326 aaKnown RBP13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 GNB2P62879 340 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 IL24Q13007 206 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 Q499Y3 187 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 OR5T2Q8NGG2 359 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 TMIGD2Q96BF3 282 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 C12orf43Q96C57 262 aaKnown RBP13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 OR14A2Q96R54 314 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 SSBP3Q9BWW4 388 aaPredicted RBP13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 NLKQ9UBE8 527 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 CTSZQ9UBR2 303 aa13.26□□□□□ -0.29
CCDC28A-201ENST00000332797 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.25□□□□□ -0.29
CCDC28A-201ENST00000332797 RAB3AP20336 220 aa13.25□□□□□ -0.29
CCDC28A-201ENST00000332797 CPT2P23786 658 aa13.25□□□□□ -0.29
CCDC28A-201ENST00000332797 TBCEQ15813 527 aaPredicted RBP13.25□□□□□ -0.29
CCDC28A-201ENST00000332797 STUMQ69YW2 141 aa13.25□□□□□ -0.29
CCDC28A-201ENST00000332797 ASPHD2Q6ICH7 369 aa13.25□□□□□ -0.29
CCDC28A-201ENST00000332797 SLC25A26Q70HW3 274 aa13.25□□□□□ -0.29
CCDC28A-201ENST00000332797 UFD1Q92890 307 aa13.25□□□□□ -0.29
CCDC28A-201ENST00000332797 SLAMF9Q96A28 289 aa13.25□□□□□ -0.29
CCDC28A-201ENST00000332797 ORAI1Q96D31 301 aa13.25□□□□□ -0.29
CCDC28A-201ENST00000332797 CCL13Q99616 98 aa13.25□□□□□ -0.29
CCDC28A-201ENST00000332797 TMED9Q9BVK6 235 aa13.25□□□□□ -0.29
CCDC28A-201ENST00000332797 YTHDF1Q9BYJ9 559 aaKnown RBP13.25□□□□□ -0.29
CCDC28A-201ENST00000332797 CLN8Q9UBY8 286 aa13.25□□□□□ -0.29
CCDC28A-201ENST00000332797 HIVEP2P31629 2446 aa13.25□□□□□ -0.29
CCDC28A-201ENST00000332797 OR2AT4A6NND4 320 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 KIAA1324LA8MWY0 1029 aaPredicted RBP13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 A8MXK9 166 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 TNFRSF13BO14836 293 aaPredicted RBP13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 TMPRSS2O15393 492 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 SPRY1O43609 319 aaPredicted RBP13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 NOS1APO75052 506 aaPredicted RBP13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 ALX3O95076 343 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 NXPH2O95156 264 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 TFF1P04155 84 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 PPP3R1P63098 170 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 SMIM21Q3B7S5 101 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 LIPKQ5VXJ0 399 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 ACP7Q6ZNF0 438 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 RNF144BQ7Z419 303 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 OR51A2Q8NGJ7 313 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 OR5D18Q8NGL1 313 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 CEP19Q96LK0 163 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 NRIP2Q9BQI9 281 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 RASL12Q9NYN1 266 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 OR5V1Q9UGF6 321 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 MALRD1Q5VYJ5 2156 aa13.24□□□□□ -0.29
CCDC28A-201ENST00000332797 A0A1B0GW55 424 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 A0A1W2PPK0 400 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 NKX6-3A6NJ46 265 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 ZNF879B4DU55 563 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 MAGEB3O15480 346 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 CYB5AP00167 134 aa13.23□□□□□ -0.29
CCDC28A-201ENST00000332797 DUX4L2P0CJ85 424 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms