RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 OR2AE1Q8NHA4 323 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 SPTSSAQ969W0 71 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 SLAMF9Q96A28 289 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 ZNF799Q96GE5 643 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 FAAP24Q9BTP7 215 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 TWSG1Q9GZX9 223 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 SPACA1Q9HBV2 294 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 ICE1Q9Y2F5 2266 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 APC2O95996 2303 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 IGHV5-10-1A0A0J9YXX1 117 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 TAAR5O14804 337 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 ZNF728P0DKX0 622 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 SUMO3P55854 103 aaPredicted RBP9.25□□□□□ -0.93
COL3A1-202ENST00000317840 OR2B8PP59922 312 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 CFHR1Q03591 330 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 CLINT1Q14677 625 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 GNMTQ14749 295 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 C9orf135Q5VTT2 229 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 ETV3LQ6ZN32 361 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 RNASE11Q8TAA1 199 aaKnown RBP9.25□□□□□ -0.93
COL3A1-202ENST00000317840 NANPQ8TBE9 248 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 FBXO17Q96EF6 278 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 BCL2L14Q9BZR8 327 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 LUZP4Q9P127 313 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 MYOTQ9UBF9 498 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 AMDHD2Q9Y303 409 aa9.25□□□□□ -0.93
COL3A1-202ENST00000317840 PUS1Q9Y606 427 aaKnown RBP eCLIP9.25□□□□□ -0.93
COL3A1-202ENST00000317840 FIGNL2A6NMB9 653 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 SERPINE3A8MV23 424 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 WRBO00258 174 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 CST4P01036 141 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 HPNP05981 417 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 MSX1P28360 303 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 HOXA1P49639 335 aaPredicted RBP9.24□□□□□ -0.93
COL3A1-202ENST00000317840 MIDNQ504T8 468 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 GGNBP1Q5YKI7 109 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 APCDD1LQ8NCL9 501 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 FAM213BQ8TBF2 198 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 SFT2D1Q8WV19 159 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 RTN4IP1Q8WWV3 396 aaPredicted RBP9.24□□□□□ -0.93
COL3A1-202ENST00000317840 MRPL24Q96A35 216 aaKnown RBP9.24□□□□□ -0.93
COL3A1-202ENST00000317840 REEP6Q96HR9 211 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 PECRQ9BY49 303 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 POLEQ07864 2286 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 ROS1P08922 2347 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 P04436 131 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 OR13C7P0DN81 318 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 ZNF44P15621 663 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 KLK2P20151 261 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 SLC35A1P78382 337 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 DHRS13Q6UX07 377 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 PLPP5Q8NEB5 264 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 OR8U1Q8NH10 309 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 ZNF501Q96CX3 271 aaPredicted RBP9.24□□□□□ -0.93
COL3A1-202ENST00000317840 SAT2Q96F10 170 aaPredicted RBP9.24□□□□□ -0.93
COL3A1-202ENST00000317840 GNRHR2Q96P88 292 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 METTL9Q9H1A3 318 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 UCK1Q9HA47 277 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 SHANK1Q9Y566 2161 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 PHF1O43189 567 aaPredicted RBP9.24□□□□□ -0.93
COL3A1-202ENST00000317840 OR7C1O76099 320 aaPredicted RBP9.24□□□□□ -0.93
COL3A1-202ENST00000317840 PGA4P0DJD7 388 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 PGA3P0DJD8 388 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 MPLP40238 635 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 DCAF12Q5T6F0 453 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 RTBDNQ9BSG5 229 aaPredicted RBP9.24□□□□□ -0.93
COL3A1-202ENST00000317840 CNTNAP3Q9BZ76 1288 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 RCC2Q9P258 522 aaKnown RBP9.24□□□□□ -0.93
COL3A1-202ENST00000317840 DNAJB11Q9UBS4 358 aa9.24□□□□□ -0.93
COL3A1-202ENST00000317840 SHISA7A6NL88 538 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 PRSS44E7EML9 344 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 MFNGO00587 321 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 FGF16O43320 207 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 MEOX2P50222 304 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 QRFPP83859 136 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 PLPPR5Q32ZL2 321 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 SHEQ5VZ18 495 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.23□□□□□ -0.93
COL3A1-202ENST00000317840 GLYATL2Q8WU03 294 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 AQP10Q96PS8 301 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 CLCC1Q96S66 551 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 FANCFQ9NPI8 374 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 CYTL1Q9NRR1 136 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 B3GAT1Q9P2W7 334 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 ZNF814B7Z6K7 855 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 F8VVB4 439 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 F8VWA3 439 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 TRAF3IP2O43734 574 aaPredicted RBP9.23□□□□□ -0.93
COL3A1-202ENST00000317840 EFNA2O43921 213 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 C1QL1O75973 258 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 PNLIPP16233 465 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 SUPT4H1P63272 117 aaKnown RBP9.23□□□□□ -0.93
COL3A1-202ENST00000317840 SRSF4Q08170 494 aaKnown RBP9.23□□□□□ -0.93
COL3A1-202ENST00000317840 PPA1Q15181 289 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 PMS2CLQ68D20 193 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 SLC16A13Q7RTY0 426 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 YRDCQ86U90 279 aaKnown RBP9.23□□□□□ -0.93
COL3A1-202ENST00000317840 RPS19BP1Q86WX3 136 aaKnown RBP9.23□□□□□ -0.93
COL3A1-202ENST00000317840 OR6X1Q8NH79 312 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 ADAMTS17Q8TE56 1095 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms