RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 BARX1Q9HBU1 254 aaPredicted RBP15.5■□□□□ 0.07
SYNPO-201ENST00000307662 ADAMTS7Q9UKP4 1686 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 PLRG1O43660 514 aaKnown RBP15.5■□□□□ 0.07
SYNPO-201ENST00000307662 GLB1P16278 677 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 BET1LQ9NYM9 111 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 MRPS2Q9Y399 296 aaKnown RBP15.5■□□□□ 0.07
SYNPO-201ENST00000307662 TRAV34A0A0B4J273 112 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 CDC42EP2O14613 210 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 IGHA1P01876 353 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 FAM3AP98173 230 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 FUT7Q11130 342 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 KLF9Q13886 244 aaPredicted RBP15.5■□□□□ 0.07
SYNPO-201ENST00000307662 LIMS2Q7Z4I7 341 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 ZG16BQ96DA0 208 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 TMPRSS13Q9BYE2 586 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 TBX21Q9UL17 535 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 TOX3O15405 576 aaPredicted RBP15.5■□□□□ 0.07
SYNPO-201ENST00000307662 HPP00738 406 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 F2RP25116 425 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 C8orf44Q96CB5 159 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 CNTD2Q9H8S5 307 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 GOLT1BQ9Y3E0 138 aa15.5■□□□□ 0.07
SYNPO-201ENST00000307662 C7orf77A4D0Y5 90 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 ADAP1O75689 374 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 OR5AC1P0C628 307 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 CHRNA7P36544 502 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 CDKN2AP42771 156 aaKnown RBP15.49■□□□□ 0.07
SYNPO-201ENST00000307662 LBHQ53QV2 105 aaPredicted RBP15.49■□□□□ 0.07
SYNPO-201ENST00000307662 GVQW1Q8N7I0 195 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 ZNF275Q9NSD4 429 aaPredicted RBP15.49■□□□□ 0.07
SYNPO-201ENST00000307662 TEX50A0A1B0GTY4 177 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 GPM6AP51674 278 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 C1QTNF6Q9BXI9 259 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 NAT8Q9UHE5 227 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 PPP2CBP62714 309 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 PPP2CAP67775 309 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 OR5I1Q13606 314 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 ZNF383Q8NA42 475 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 OR1F12Q8NHA8 337 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 NUBPLQ8TB37 319 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 ERVS71-1P61550 626 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 CEBPEQ15744 281 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 SLC25A30Q5SVS4 291 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 FAM78BQ5VT40 261 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 JMJD6Q6NYC1 403 aaPredicted RBP15.49■□□□□ 0.07
SYNPO-201ENST00000307662 M0QZK8 103 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 GGCTO75223 188 aaKnown RBP15.49■□□□□ 0.07
SYNPO-201ENST00000307662 KRASP01116 189 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 RPS16P62249 146 aaKnown RBP15.49■□□□□ 0.07
SYNPO-201ENST00000307662 RPEL1Q2QD12 228 aa15.49■□□□□ 0.07
SYNPO-201ENST00000307662 RPL13AP40429 203 aaKnown RBP15.48■□□□□ 0.07
SYNPO-201ENST00000307662 FMODQ06828 376 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 C6orf201Q7Z4U5 140 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 IFI44Q8TCB0 444 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 HLA-CQ95604 372 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 FAAP24Q9BTP7 215 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 URB1O60287 2271 aaKnown RBP15.48■□□□□ 0.07
SYNPO-201ENST00000307662 ECM29Q5VYK3 1845 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 PAPPAQ13219 1627 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 DHRS3O75911 302 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 DAOP14920 347 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 OR3A4PP47883 348 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 P2RY1P47900 373 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 SULT1A1P50225 295 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 ZNF117Q03924 483 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 TCTN1Q2MV58 587 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 LHX8Q68G74 356 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 AMER3Q8N944 861 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 TP53I13Q8NBR0 393 aaPredicted RBP15.48■□□□□ 0.07
SYNPO-201ENST00000307662 PPIL1Q9Y3C6 166 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 TIMM9Q9Y5J7 89 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 B4DEV8 164 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 RPL11P62913 178 aaKnown RBP15.48■□□□□ 0.07
SYNPO-201ENST00000307662 ATOH1Q92858 354 aaPredicted RBP15.48■□□□□ 0.07
SYNPO-201ENST00000307662 POM121Q96HA1 1249 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 LIPGQ9Y5X9 500 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 SSC5DA1L4H1 1573 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 GYPAP02724 150 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 FAM157BP0CG42 384 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 PAX5Q02548 391 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 C11orf42Q8N5U0 333 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 OR4D9Q8NGE8 314 aa15.48■□□□□ 0.07
SYNPO-201ENST00000307662 FER1L6Q2WGJ9 1857 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 YIF1AO95070 293 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 WDR73Q6P4I2 378 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 CLEC18BQ6UXF7 455 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 CDRT15L2A8MXV6 281 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 LY86O95711 162 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 IL24Q13007 206 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 BSXQ3C1V8 233 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 TIPARPQ7Z3E1 657 aaKnown RBP15.47■□□□□ 0.07
SYNPO-201ENST00000307662 APOBEC3DQ96AK3 386 aaPredicted RBP15.47■□□□□ 0.07
SYNPO-201ENST00000307662 POM121L2Q96KW2 1035 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 MMP17Q9ULZ9 603 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 MICAL3Q7RTP6 2002 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 TRBV5-3A0A0A0MS03 114 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 MBPP02686 304 aaPredicted RBP15.47■□□□□ 0.07
SYNPO-201ENST00000307662 CTSDP07339 412 aaPredicted RBP15.47■□□□□ 0.07
SYNPO-201ENST00000307662 GNG4P50150 75 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 SURF2Q15527 256 aaPredicted RBP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms