RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TIMM10BQ9Y5J6 103 aa17.45■□□□□ 0.38
VPS53-201ENST00000291074 DHRS7CA6NNS2 312 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 TAS2R46P59540 309 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 ZNF92Q03936 586 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 ACOT7LQ6ZUV0 252 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 PDZD9Q8IXQ8 264 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 BHLHE23Q8NDY6 225 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 OR2M7Q8NG81 312 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 SPSB1Q96BD6 273 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 CDC6Q99741 560 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 PFDN2Q9UHV9 154 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 BOKQ9UMX3 212 aaPredicted RBP17.44■□□□□ 0.38
VPS53-201ENST00000291074 SP9P0CG40 484 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 RSU1Q15404 277 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 KRTAP27-1Q3LI81 207 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 OVCH2Q7RTZ1 564 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 TMEM17Q86X19 198 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 CCDC54Q8NEL0 328 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 FAAP24Q9BTP7 215 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 PLA2G3Q9NZ20 509 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 CSAG2Q9Y5P2 127 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 FAM166BA8MTA8 275 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 DYRK2Q92630 601 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 EMG1Q92979 244 aaKnown RBP17.44■□□□□ 0.38
VPS53-201ENST00000291074 METTL9Q9H1A3 318 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 ZNF703Q9H7S9 590 aaPredicted RBP17.44■□□□□ 0.38
VPS53-201ENST00000291074 MED9Q9NWA0 146 aa17.44■□□□□ 0.38
VPS53-201ENST00000291074 FAM186AA6NE01 2351 aa17.43■□□□□ 0.38
VPS53-201ENST00000291074 CSTBP04080 98 aaKnown RBP17.43■□□□□ 0.38
VPS53-201ENST00000291074 PSMB6P28072 239 aa17.43■□□□□ 0.38
VPS53-201ENST00000291074 RIPPLY2Q5TAB7 128 aa17.43■□□□□ 0.38
VPS53-201ENST00000291074 BRICD5Q6PL45 260 aa17.43■□□□□ 0.38
VPS53-201ENST00000291074 MRPS18CQ9Y3D5 142 aaKnown RBP17.43■□□□□ 0.38
VPS53-201ENST00000291074 ZNF587BE7ETH6 402 aa17.43■□□□□ 0.38
VPS53-201ENST00000291074 FAM3AP98173 230 aa17.43■□□□□ 0.38
VPS53-201ENST00000291074 CNN3Q15417 329 aaKnown RBP17.43■□□□□ 0.38
VPS53-201ENST00000291074 ZNF528Q3MIS6 628 aa17.43■□□□□ 0.38
VPS53-201ENST00000291074 LINC00696Q6ZRV3 163 aa17.43■□□□□ 0.38
VPS53-201ENST00000291074 BORCS8Q96FH0 119 aa17.43■□□□□ 0.38
VPS53-201ENST00000291074 C12orf4Q9NQ89 552 aa17.43■□□□□ 0.38
VPS53-201ENST00000291074 DOCK7Q96N67 2140 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 IGKV1-12A0A0C4DH73 117 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 KNG1P01042 644 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 NRASP01111 189 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 IGKV1D-12P01611 117 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 CD59P13987 128 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 RRADP55042 308 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 PABPC1L2AQ5JQF8 200 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 ABHD17BQ5VST6 288 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 RPUSD3Q6P087 351 aaKnown RBP17.42■□□□□ 0.38
VPS53-201ENST00000291074 ZSCAN4Q8NAM6 433 aaPredicted RBP17.42■□□□□ 0.38
VPS53-201ENST00000291074 CPEB3Q8NE35 698 aaKnown RBP17.42■□□□□ 0.38
VPS53-201ENST00000291074 GPR160Q9UJ42 338 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 NUP50Q9UKX7 468 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 NOSIPQ9Y314 301 aaKnown RBP17.42■□□□□ 0.38
VPS53-201ENST00000291074 hCG_38984A0A1B0GV85 526 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 H0YIZ8 118 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 ZNF205O95201 554 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 MMP7P09237 267 aaPredicted RBP17.42■□□□□ 0.38
VPS53-201ENST00000291074 EDN3P14138 238 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 RPS2P15880 293 aaKnown RBP17.42■□□□□ 0.38
VPS53-201ENST00000291074 M6PRP20645 277 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 RBP2P50120 134 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 PIGYQ3MUY2 71 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 BATF2Q8N1L9 274 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 INO80EQ8NBZ0 244 aaPredicted RBP17.42■□□□□ 0.38
VPS53-201ENST00000291074 DCUN1D4Q92564 292 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 SLC6A15Q9H2J7 730 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 SLC7A10Q9NS82 523 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 AK3Q9UIJ7 227 aa17.42■□□□□ 0.38
VPS53-201ENST00000291074 PGAM2P15259 253 aa17.41■□□□□ 0.38
VPS53-201ENST00000291074 ZP3P21754 424 aa17.41■□□□□ 0.38
VPS53-201ENST00000291074 ITGA3P26006 1051 aa17.41■□□□□ 0.38
VPS53-201ENST00000291074 OPRM1P35372 400 aa17.41■□□□□ 0.38
VPS53-201ENST00000291074 MAGEA5P43359 124 aa17.41■□□□□ 0.38
VPS53-201ENST00000291074 LHX2P50458 406 aa17.41■□□□□ 0.38
VPS53-201ENST00000291074 UNQ6126/PRO20091Q6UXV3 157 aa17.41■□□□□ 0.38
VPS53-201ENST00000291074 RRNAD1Q96FB5 475 aaKnown RBP17.41■□□□□ 0.38
VPS53-201ENST00000291074 FAM173AQ9BQD7 235 aa17.41■□□□□ 0.38
VPS53-201ENST00000291074 RNF126Q9BV68 326 aa17.41■□□□□ 0.38
VPS53-201ENST00000291074 RASL12Q9NYN1 266 aa17.41■□□□□ 0.38
VPS53-201ENST00000291074 A0A096LPE4 126 aa17.41■□□□□ 0.38
VPS53-201ENST00000291074 A0A1W2PPZ6 126 aa17.41■□□□□ 0.38
VPS53-201ENST00000291074 FOXG1P55316 489 aaPredicted RBP17.41■□□□□ 0.38
VPS53-201ENST00000291074 OR10C1Q96KK4 312 aa17.41■□□□□ 0.38
VPS53-201ENST00000291074 NMES1Q9C002 83 aa17.41■□□□□ 0.38
VPS53-201ENST00000291074 F5H0A9 414 aaPredicted RBP17.4■□□□□ 0.38
VPS53-201ENST00000291074 M0R296 226 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 MRPL33O75394 65 aaKnown RBP17.4■□□□□ 0.38
VPS53-201ENST00000291074 PDCD1Q15116 288 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 OR1C1Q15619 314 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 TUSC1Q2TAM9 212 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 TMEM42Q69YG0 159 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 PIGCQ92535 297 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 SCGB3A2Q96PL1 93 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 SULT4A1Q9BR01 284 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 ZNF2Q9BSG1 426 aaPredicted RBP17.4■□□□□ 0.38
VPS53-201ENST00000291074 URB1O60287 2271 aaKnown RBP17.4■□□□□ 0.38
VPS53-201ENST00000291074 KMT2EQ8IZD2 1858 aa17.4■□□□□ 0.38
VPS53-201ENST00000291074 FAM221AA4D161 298 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms