RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 SHANK1Q9Y566 2161 aa8.82□□□□□ -1
LIG3-201ENST00000262327 ZNF726A6NNF4 738 aa8.82□□□□□ -1
LIG3-201ENST00000262327 MFNGO00587 321 aa8.82□□□□□ -1
LIG3-201ENST00000262327 TOX3O15405 576 aaPredicted RBP8.82□□□□□ -1
LIG3-201ENST00000262327 ZNHIT1O43257 154 aa8.82□□□□□ -1
LIG3-201ENST00000262327 PTGER4P35408 488 aa8.82□□□□□ -1
LIG3-201ENST00000262327 TAS2R60P59551 318 aa8.82□□□□□ -1
LIG3-201ENST00000262327 PJVKQ0ZLH3 352 aa8.82□□□□□ -1
LIG3-201ENST00000262327 SMCO1Q147U7 214 aa8.82□□□□□ -1
LIG3-201ENST00000262327 IAH1Q2TAA2 248 aaPredicted RBP8.82□□□□□ -1
LIG3-201ENST00000262327 PLPPR5Q32ZL2 321 aa8.82□□□□□ -1
LIG3-201ENST00000262327 CHRFAM7AQ494W8 412 aa8.82□□□□□ -1
LIG3-201ENST00000262327 THEM4Q5T1C6 240 aa8.82□□□□□ -1
LIG3-201ENST00000262327 TSPO2Q5TGU0 170 aa8.82□□□□□ -1
LIG3-201ENST00000262327 ZNF529Q6P280 563 aa8.82□□□□□ -1
LIG3-201ENST00000262327 NAT6Q93015 286 aa8.82□□□□□ -1
LIG3-201ENST00000262327 TOMM40LQ969M1 308 aa8.82□□□□□ -1
LIG3-201ENST00000262327 BSCL2Q96G97 398 aaPredicted RBP8.82□□□□□ -1
LIG3-201ENST00000262327 MEGF10Q96KG7 1140 aa8.82□□□□□ -1
LIG3-201ENST00000262327 LYZL4Q96KX0 146 aa8.82□□□□□ -1
LIG3-201ENST00000262327 OR6C1Q96RD1 312 aa8.82□□□□□ -1
LIG3-201ENST00000262327 SLC26A1Q9H2B4 701 aa8.82□□□□□ -1
LIG3-201ENST00000262327 TAF9BQ9HBM6 251 aa8.82□□□□□ -1
LIG3-201ENST00000262327 LPAR3Q9UBY5 353 aa8.82□□□□□ -1
LIG3-201ENST00000262327 DMRT1Q9Y5R6 373 aa8.82□□□□□ -1
LIG3-201ENST00000262327 FAM186AA6NE01 2351 aa8.81□□□□□ -1
LIG3-201ENST00000262327 MUC3AQ02505 3323 aa8.81□□□□□ -1
LIG3-201ENST00000262327 C5orf52A6NGY3 159 aa8.81□□□□□ -1
LIG3-201ENST00000262327 DHRS7CA6NNS2 312 aa8.81□□□□□ -1
LIG3-201ENST00000262327 MPZP25189 248 aa8.81□□□□□ -1
LIG3-201ENST00000262327 CYCSP99999 105 aaKnown RBP8.81□□□□□ -1
LIG3-201ENST00000262327 HABP2Q14520 560 aaPredicted RBP8.81□□□□□ -1
LIG3-201ENST00000262327 UBE2V2Q15819 145 aa8.81□□□□□ -1
LIG3-201ENST00000262327 RNF212Q495C1 297 aa8.81□□□□□ -1
LIG3-201ENST00000262327 PHYHD1Q5SRE7 291 aa8.81□□□□□ -1
LIG3-201ENST00000262327 NFAM1Q8NET5 270 aaPredicted RBP8.81□□□□□ -1
LIG3-201ENST00000262327 OR56B1Q8NGI3 324 aa8.81□□□□□ -1
LIG3-201ENST00000262327 C14orf144Q96I85 54 aa8.81□□□□□ -1
LIG3-201ENST00000262327 SSX3Q99909 188 aa8.81□□□□□ -1
LIG3-201ENST00000262327 NRIP2Q9BQI9 281 aa8.81□□□□□ -1
LIG3-201ENST00000262327 C20orf24Q9BUV8 137 aa8.81□□□□□ -1
LIG3-201ENST00000262327 SLC5A7Q9GZV3 580 aa8.81□□□□□ -1
LIG3-201ENST00000262327 PNRC2Q9NPJ4 139 aaKnown RBP8.81□□□□□ -1
LIG3-201ENST00000262327 MMP26Q9NRE1 261 aa8.81□□□□□ -1
LIG3-201ENST00000262327 TMEM100Q9NV29 134 aa8.81□□□□□ -1
LIG3-201ENST00000262327 MCTS1Q9ULC4 181 aaKnown RBP8.81□□□□□ -1
LIG3-201ENST00000262327 LY6G6EA0A0G2JKS1 128 aa8.81□□□□□ -1
LIG3-201ENST00000262327 UBE2CO00762 179 aa8.81□□□□□ -1
LIG3-201ENST00000262327 GALR2O43603 387 aaPredicted RBP8.81□□□□□ -1
LIG3-201ENST00000262327 CSTBP04080 98 aaKnown RBP8.81□□□□□ -1
LIG3-201ENST00000262327 GSTP1P09211 210 aaKnown RBP8.81□□□□□ -1
LIG3-201ENST00000262327 SFTA3P0C7M3 94 aa8.81□□□□□ -1
LIG3-201ENST00000262327 ZNF883P0CG24 379 aa8.81□□□□□ -1
LIG3-201ENST00000262327 DAOP14920 347 aa8.81□□□□□ -1
LIG3-201ENST00000262327 SPEM2Q0P670 501 aa8.81□□□□□ -1
LIG3-201ENST00000262327 NKAIN1Q4KMZ8 207 aa8.81□□□□□ -1
LIG3-201ENST00000262327 OR2AE1Q8NHA4 323 aa8.81□□□□□ -1
LIG3-201ENST00000262327 AKR1E2Q96JD6 320 aa8.81□□□□□ -1
LIG3-201ENST00000262327 LURAP1Q96LR2 239 aa8.81□□□□□ -1
LIG3-201ENST00000262327 JSRP1Q96MG2 331 aaPredicted RBP8.81□□□□□ -1
LIG3-201ENST00000262327 ZNF2Q9BSG1 426 aaPredicted RBP8.81□□□□□ -1
LIG3-201ENST00000262327 URM1Q9BTM9 101 aaKnown RBP8.81□□□□□ -1
LIG3-201ENST00000262327 ZNF160Q9HCG1 818 aa8.81□□□□□ -1
LIG3-201ENST00000262327 FSCN3Q9NQT6 498 aa8.81□□□□□ -1
LIG3-201ENST00000262327 CBY1Q9Y3M2 126 aa8.81□□□□□ -1
LIG3-201ENST00000262327 U3KQA8 63 aa8.81□□□□□ -1
LIG3-201ENST00000262327 TRBV6-7A0A0A0MS04 114 aa8.8□□□□□ -1
LIG3-201ENST00000262327 SPRY1O43609 319 aaPredicted RBP8.8□□□□□ -1
LIG3-201ENST00000262327 OR8U9P0C7N5 309 aa8.8□□□□□ -1
LIG3-201ENST00000262327 FPR2P25090 351 aa8.8□□□□□ -1
LIG3-201ENST00000262327 FHITP49789 147 aa8.8□□□□□ -1
LIG3-201ENST00000262327 ASCL1P50553 236 aa8.8□□□□□ -1
LIG3-201ENST00000262327 DUSP3P51452 185 aaPredicted RBP8.8□□□□□ -1
LIG3-201ENST00000262327 FXYD4P59646 89 aa8.8□□□□□ -1
LIG3-201ENST00000262327 VAX1Q5SQQ9 334 aa8.8□□□□□ -1
LIG3-201ENST00000262327 DHRS7BQ6IAN0 325 aaPredicted RBP8.8□□□□□ -1
LIG3-201ENST00000262327 ARRDC1Q8N5I2 433 aa8.8□□□□□ -1
LIG3-201ENST00000262327 POC1AQ8NBT0 407 aa8.8□□□□□ -1
LIG3-201ENST00000262327 PLPP5Q8NEB5 264 aa8.8□□□□□ -1
LIG3-201ENST00000262327 OR8U1Q8NH10 309 aa8.8□□□□□ -1
LIG3-201ENST00000262327 MRPL24Q96A35 216 aaKnown RBP8.8□□□□□ -1
LIG3-201ENST00000262327 ZNF837Q96EG3 531 aaPredicted RBP8.8□□□□□ -1
LIG3-201ENST00000262327 REEP6Q96HR9 211 aa8.8□□□□□ -1
LIG3-201ENST00000262327 C2orf50Q96LR7 162 aa8.8□□□□□ -1
LIG3-201ENST00000262327 RBM24Q9BX46 236 aaKnown RBP8.8□□□□□ -1
LIG3-201ENST00000262327 PECRQ9BY49 303 aa8.8□□□□□ -1
LIG3-201ENST00000262327 RAB18Q9NP72 206 aa8.8□□□□□ -1
LIG3-201ENST00000262327 PATE3B3GLJ2 98 aa8.8□□□□□ -1
LIG3-201ENST00000262327 RNASEK-C17orf49H0YIS7 233 aa8.8□□□□□ -1
LIG3-201ENST00000262327 XRCC2O43543 280 aa8.8□□□□□ -1
LIG3-201ENST00000262327 DIRAS3O95661 229 aa8.8□□□□□ -1
LIG3-201ENST00000262327 RPS2P15880 293 aaKnown RBP8.8□□□□□ -1
LIG3-201ENST00000262327 MPLP40238 635 aa8.8□□□□□ -1
LIG3-201ENST00000262327 PTGDSP41222 190 aa8.8□□□□□ -1
LIG3-201ENST00000262327 PPT1P50897 306 aa8.8□□□□□ -1
LIG3-201ENST00000262327 RAB5BP61020 215 aa8.8□□□□□ -1
LIG3-201ENST00000262327 TAF9Q16594 264 aa8.8□□□□□ -1
LIG3-201ENST00000262327 CRIP3Q6Q6R5 217 aa8.8□□□□□ -1
LIG3-201ENST00000262327 ZNF574Q6ZN55 896 aaPredicted RBP8.8□□□□□ -1
LIG3-201ENST00000262327 SEMA6DQ8NFY4 1073 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms