RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 RER1O15258 196 aa12.65□□□□□ -0.38
SDC1-201ENST00000254351 SLC31A2O15432 143 aa12.65□□□□□ -0.38
SDC1-201ENST00000254351 TNFSF14O43557 240 aa12.65□□□□□ -0.38
SDC1-201ENST00000254351 OR5AC1P0C628 307 aa12.65□□□□□ -0.38
SDC1-201ENST00000254351 TRGC1P0CF51 173 aa12.65□□□□□ -0.38
SDC1-201ENST00000254351 HIST1H1BP16401 226 aaKnown RBP12.65□□□□□ -0.38
SDC1-201ENST00000254351 APOBEC1P41238 236 aaKnown RBP12.65□□□□□ -0.38
SDC1-201ENST00000254351 RUNX1Q01196 453 aa12.65□□□□□ -0.38
SDC1-201ENST00000254351 RHEBQ15382 184 aa12.65□□□□□ -0.38
SDC1-201ENST00000254351 UBE2V2Q15819 145 aa12.65□□□□□ -0.38
SDC1-201ENST00000254351 ZNF880Q6PDB4 577 aa12.65□□□□□ -0.38
SDC1-201ENST00000254351 OPN5Q6U736 354 aa12.65□□□□□ -0.38
SDC1-201ENST00000254351 FRZBQ92765 325 aa12.65□□□□□ -0.38
SDC1-201ENST00000254351 WFIKKN1Q96NZ8 548 aa12.65□□□□□ -0.38
SDC1-201ENST00000254351 ZNF107Q9UII5 783 aaPredicted RBP12.65□□□□□ -0.38
SDC1-201ENST00000254351 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.64□□□□□ -0.39
SDC1-201ENST00000254351 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.64□□□□□ -0.39
SDC1-201ENST00000254351 PRR19A6NJB7 356 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 MMP9P14780 707 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 PAX6P26367 422 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 APLNRP35414 380 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 MFAP5Q13361 173 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 RUNX3Q13761 415 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 ELOBQ15370 118 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 NECAP1Q8NC96 275 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 OR11L1Q8NGX0 322 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 OR2G3Q8NGZ4 309 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 STT3BQ8TCJ2 826 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 MUCL1Q96DR8 90 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 WDR92Q96MX6 357 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 MESP1Q9BRJ9 268 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 SLCO1B1Q9Y6L6 691 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 LOC390937A0A1W2PQ73 354 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 FAM24AA6NFZ4 105 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 TMEM14DPA8MWL7 114 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 PLPP3O14495 311 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 CST7O76096 145 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 HOXC4P09017 264 aaPredicted RBP12.64□□□□□ -0.39
SDC1-201ENST00000254351 MMP7P09237 267 aaPredicted RBP12.64□□□□□ -0.39
SDC1-201ENST00000254351 PGA4P0DJD7 388 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 PGA5P0DJD9 388 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 BIDP55957 195 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 SGCBQ16585 318 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 ZNF776Q68DI1 518 aaPredicted RBP12.64□□□□□ -0.39
SDC1-201ENST00000254351 RTL10Q7L3V2 364 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 C19orf47Q8N9M1 422 aaKnown RBP12.64□□□□□ -0.39
SDC1-201ENST00000254351 BMFQ96LC9 184 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 PACRGQ96M98 296 aaPredicted RBP12.64□□□□□ -0.39
SDC1-201ENST00000254351 PLA2G2FQ9BZM2 168 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 OR10A2Q9H208 303 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 LMAN1LQ9HAT1 526 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 SDHAF3Q9NRP4 125 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 CLDN16Q9Y5I7 305 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 ZNF724A8MTY0 619 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 SRSF10O75494 262 aaKnown RBP12.64□□□□□ -0.39
SDC1-201ENST00000254351 HPNP05981 417 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 CFPP27918 469 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 OR8G1Q15617 311 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 ABCA11PQ4W5N1 156 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 DPPA2Q7Z7J5 298 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 ZNF429Q86V71 674 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 LYPD6Q86Y78 171 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 PPP4R1LQ9P1A2 415 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 CYP8B1Q9UNU6 501 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 SLC7A11Q9UPY5 501 aa12.64□□□□□ -0.39
SDC1-201ENST00000254351 IGHV3-20A0A0C4DH32 117 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 ANGPTL7O43827 346 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 AFF3P51826 1226 aaKnown RBP12.63□□□□□ -0.39
SDC1-201ENST00000254351 RND3P61587 244 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 FAM3AP98173 230 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 C5orf24Q7Z6I8 188 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 RNASE11Q8TAA1 199 aaKnown RBP12.63□□□□□ -0.39
SDC1-201ENST00000254351 FAM206AQ9NX38 181 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 MCTS1Q9ULC4 181 aaKnown RBP12.63□□□□□ -0.39
SDC1-201ENST00000254351 OR5H15A6NDH6 313 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 OR5H1A6NKK0 313 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 TCAPO15273 167 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 ADH1BP00325 375 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 PLA2G5P39877 138 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 IL15RAQ13261 267 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 RAB30Q15771 203 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 FNDC7Q5VTL7 733 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 HLA-DQA1Q5Y7H0 255 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 FBXW12Q6X9E4 464 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 KCNG3Q8TAE7 436 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 LIME1Q9H400 295 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 IGFLR1Q9H665 355 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 PLEKHJ1Q9NW61 149 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 OSGIN2Q9Y236 505 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 ARHGAP21Q5T5U3 1957 aa12.63□□□□□ -0.39
SDC1-201ENST00000254351 LYL1P12980 280 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 ZNF121P58317 390 aaPredicted RBP12.62□□□□□ -0.39
SDC1-201ENST00000254351 SLC26A5P58743 744 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 TLE3Q04726 772 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 PLCXD2Q0VAA5 305 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 YAF2Q8IY57 180 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 OR10AD1Q8NGE0 317 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 OR10S1Q8NGN2 331 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 HPSE2Q8WWQ2 592 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 SLC39A7Q92504 469 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms