RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 OR5B21A6NL26 309 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 TTRP02766 147 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 PSMB3P49720 205 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 KRTDAPP60985 99 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 PMS2P11Q13670 270 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 SEZ6L2Q6UXD5 910 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 RIMKLAQ8IXN7 391 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 C17orf78Q8N4C9 275 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 OTOSQ8NHW6 89 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 GALMQ96C23 342 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 MS4A3Q96HJ5 214 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 CA10Q9NS85 328 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 A0A096LPE4 126 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 A0A1W2PPZ6 126 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 CRHP06850 196 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 OR4E1P0C645 316 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 KRTCAP3Q53RY4 240 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 ASCL5Q7RTU5 278 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 SPICQ8N5J4 248 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 OR13C8Q8NGS7 320 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 FKBP11Q9NYL4 201 aa11.42□□□□□ -0.58
USP40-201ENST00000251722 NCR1O76036 304 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 DUSP2Q05923 314 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 SEC22AQ96IW7 307 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 SLX1AQ9BQ83 275 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 SLC26A1Q9H2B4 701 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 GNB4Q9HAV0 340 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 MED29Q9NX70 200 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 IL19Q9UHD0 177 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 MPC1Q9Y5U8 109 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 GOLGA4Q13439 2230 aaKnown RBP11.41□□□□□ -0.58
USP40-201ENST00000251722 G3V3Q6 166 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 SIRPB1O00241 398 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 IFI6P09912 130 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 SOX18P35713 384 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 EVX1P49640 407 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 UBE2G2P60604 165 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 COL9A2Q14055 689 aaPredicted RBP11.41□□□□□ -0.58
USP40-201ENST00000251722 DMRTA1Q5VZB9 504 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 ANKRD16Q6P6B7 361 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 BTNL8Q6UX41 500 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 DUSP18Q8NEJ0 188 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 ADAT1Q9BUB4 502 aaKnown RBP11.41□□□□□ -0.58
USP40-201ENST00000251722 CLDN34H7C241 214 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 CLDN12P56749 244 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 KLF3P57682 345 aaPredicted RBP11.41□□□□□ -0.58
USP40-201ENST00000251722 TMPRSS3P57727 454 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 ZNF121P58317 390 aaPredicted RBP11.41□□□□□ -0.58
USP40-201ENST00000251722 TCTN1Q2MV58 587 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 RPUSD3Q6P087 351 aaKnown RBP11.41□□□□□ -0.58
USP40-201ENST00000251722 CD300LDQ6UXZ3 194 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 OR5M11Q96RB7 305 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 TAS2R5Q9NYW4 299 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 OR5H14A6NHG9 310 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 FAM157BP0CG42 384 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 RPL13AP40429 203 aaKnown RBP11.41□□□□□ -0.58
USP40-201ENST00000251722 PRRX1P54821 245 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 RPS16P62249 146 aaKnown RBP11.41□□□□□ -0.58
USP40-201ENST00000251722 CTAG1AP78358 180 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 LYRM7Q5U5X0 104 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 FAHD2BQ6P2I3 314 aaPredicted RBP11.41□□□□□ -0.58
USP40-201ENST00000251722 FAHD2AQ96GK7 314 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 FAM210BQ96KR6 192 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 DIRC2Q96SL1 478 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 UQCC1Q9NVA1 299 aa11.41□□□□□ -0.58
USP40-201ENST00000251722 COLQQ9Y215 455 aaPredicted RBP11.41□□□□□ -0.58
USP40-201ENST00000251722 CRYM-AS1A6NIL9 109 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 HAGHQ16775 308 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 PWWP2BQ6NUJ5 590 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 WDR73Q6P4I2 378 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 ZNF66Q6ZN08 573 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 LRFN3Q9BTN0 628 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 PLEKHA2Q9HB19 425 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 LPAR3Q9UBY5 353 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 ARL2-SNX15V9GYD0 113 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 SH2D7A6NKC9 451 aaPredicted RBP11.4□□□□□ -0.58
USP40-201ENST00000251722 CTSVO60911 334 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 ACSM5Q6NUN0 579 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 SPNS3Q6ZMD2 512 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 OR10G3Q8NGC4 313 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 OR6X1Q8NH79 312 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 CHRDL1Q9BU40 450 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 MS4A7Q9GZW8 240 aaPredicted RBP11.4□□□□□ -0.58
USP40-201ENST00000251722 DNAJB12Q9NXW2 375 aaKnown RBP11.4□□□□□ -0.58
USP40-201ENST00000251722 RGPD3A6NKT7 1758 aaPredicted RBP11.4□□□□□ -0.58
USP40-201ENST00000251722 ZNF724A8MTY0 619 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 KHDC1LQ5JSQ8 128 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 CXXC4Q9H2H0 198 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 HES4Q9HCC6 221 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 QSER1Q2KHR3 1735 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 H2AFB1P0C5Y9 115 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 STAG3L3P0CL85 134 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 GNRHR2Q96P88 292 aa11.4□□□□□ -0.58
USP40-201ENST00000251722 CGGBP1Q9UFW8 167 aaPredicted RBP11.4□□□□□ -0.58
USP40-201ENST00000251722 NPIPB8E9PQR5 432 aa11.4□□□□□ -0.59
USP40-201ENST00000251722 LINC00614P0C842 121 aa11.4□□□□□ -0.59
USP40-201ENST00000251722 MGST1P10620 155 aaKnown RBP11.4□□□□□ -0.59
USP40-201ENST00000251722 SH2D5Q6ZV89 423 aa11.4□□□□□ -0.59
USP40-201ENST00000251722 BHLHA15Q7RTS1 189 aaPredicted RBP11.4□□□□□ -0.59
USP40-201ENST00000251722 OR10D3Q8NH80 312 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms