RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 CEACAM6P40199 344 aa12.09□□□□□ -0.47
SF3A1-201ENST00000215793 ERVFC1-1P60608 527 aa12.09□□□□□ -0.47
SF3A1-201ENST00000215793 PPP1CBP62140 327 aa12.09□□□□□ -0.47
SF3A1-201ENST00000215793 SUMO1P63165 101 aaKnown RBP12.09□□□□□ -0.47
SF3A1-201ENST00000215793 ZNF528Q3MIS6 628 aa12.09□□□□□ -0.47
SF3A1-201ENST00000215793 OR10D3Q8NH80 312 aa12.09□□□□□ -0.47
SF3A1-201ENST00000215793 NUBPLQ8TB37 319 aa12.09□□□□□ -0.47
SF3A1-201ENST00000215793 GABRG3Q99928 467 aa12.09□□□□□ -0.47
SF3A1-201ENST00000215793 AAMDCQ9H7C9 122 aa12.09□□□□□ -0.47
SF3A1-201ENST00000215793 J3QR89 54 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 PLPP3O14495 311 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 POU2F2P09086 479 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 MEOX1P50221 254 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 RHBDD2Q6NTF9 364 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 THSD4Q6ZMP0 1018 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 CLRN3Q8NCR9 226 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 MAP6Q96JE9 813 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 LSM2Q9Y333 95 aaKnown RBP12.08□□□□□ -0.48
SF3A1-201ENST00000215793 LRRC3CA6NJW4 275 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 CA6P23280 308 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 CTGFP29279 349 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 LIMK1P53667 647 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 PPP1R1AQ13522 171 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 DHRS13Q6UX07 377 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 VASH2Q86V25 355 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 PLAC1Q9HBJ0 212 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 TRPM3Q9HCF6 1732 aaPredicted RBP12.08□□□□□ -0.48
SF3A1-201ENST00000215793 SEMG1P04279 462 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 PAX5Q02548 391 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 MIDNQ504T8 468 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 ETFRF1Q6IPR1 90 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 MRGPREQ86SM8 312 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 ZNF429Q86V71 674 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 GPR137Q96N19 417 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 NEURL2Q9BR09 285 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 RPP25Q9BUL9 199 aaKnown RBP12.08□□□□□ -0.48
SF3A1-201ENST00000215793 SIRT3Q9NTG7 399 aaPredicted RBP12.08□□□□□ -0.48
SF3A1-201ENST00000215793 WSB1Q9Y6I7 421 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 DUS4LO95620 317 aaKnown RBP12.08□□□□□ -0.48
SF3A1-201ENST00000215793 CTLA4P16410 223 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 BMI1P35226 326 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 NHLRC1Q6VVB1 395 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 MUC20Q8N307 709 aaPredicted RBP12.08□□□□□ -0.48
SF3A1-201ENST00000215793 BCL2L2Q92843 193 aaPredicted RBP12.08□□□□□ -0.48
SF3A1-201ENST00000215793 DHRS9Q9BPW9 319 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 PLA2G2FQ9BZM2 168 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 GOLT1BQ9Y3E0 138 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 ARL2-SNX15V9GYD0 113 aa12.08□□□□□ -0.48
SF3A1-201ENST00000215793 SCN9AQ15858 1988 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 IGHV1OR15-9A0A0B4J2B8 117 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 H3BMH7 237 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 PTHLHP12272 177 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 FAM3AP98173 230 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 CLEC12BQ2HXU8 276 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.07□□□□□ -0.48
SF3A1-201ENST00000215793 OR10V1Q8NGI7 309 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 OR6X1Q8NH79 312 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 MARVELD1Q9BSK0 173 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 FAAP24Q9BTP7 215 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 MMP26Q9NRE1 261 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 COL22A1Q8NFW1 1626 aaPredicted RBP12.07□□□□□ -0.48
SF3A1-201ENST00000215793 SFTA3P0C7M3 94 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 RANP62826 216 aaKnown RBP12.07□□□□□ -0.48
SF3A1-201ENST00000215793 ST3GAL2Q16842 350 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 ALKBH6Q3KRA9 238 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 ZDHHC16Q969W1 377 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 TRMT61AQ96FX7 289 aaKnown RBP12.07□□□□□ -0.48
SF3A1-201ENST00000215793 LRFN3Q9BTN0 628 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 NAA60Q9H7X0 242 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 FKBP11Q9NYL4 201 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 LAMA4Q16363 1823 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 FGF2P09038 288 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 S100A4P26447 101 aaKnown RBP12.07□□□□□ -0.48
SF3A1-201ENST00000215793 SLC38A11Q08AI6 406 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 CBLN3Q6UW01 205 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 PHYHIPLQ96FC7 376 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 MPC1Q9Y5U8 109 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 C9orf170A2RU37 121 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 CDC14BO60729 498 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 SMIM17P0DL12 118 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 RAC3P60763 192 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 IL13RA2Q14627 380 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 C19orf35Q6ZS72 473 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 CXorf67Q86X51 503 aaPredicted RBP12.07□□□□□ -0.48
SF3A1-201ENST00000215793 LYG1Q8N1E2 194 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 C17orf47Q8NEP4 570 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 OR5D13Q8NGL4 314 aa12.07□□□□□ -0.48
SF3A1-201ENST00000215793 WDR61Q9GZS3 305 aaKnown RBP12.07□□□□□ -0.48
SF3A1-201ENST00000215793 C3orf85A0A1B0GTC6 90 aa12.06□□□□□ -0.48
SF3A1-201ENST00000215793 ADAM20O43506 726 aa12.06□□□□□ -0.48
SF3A1-201ENST00000215793 FCGR3BO75015 233 aa12.06□□□□□ -0.48
SF3A1-201ENST00000215793 LPAR6P43657 344 aa12.06□□□□□ -0.48
SF3A1-201ENST00000215793 ZNF83P51522 516 aa12.06□□□□□ -0.48
SF3A1-201ENST00000215793 MLF1P58340 268 aa12.06□□□□□ -0.48
SF3A1-201ENST00000215793 TPPP2P59282 170 aa12.06□□□□□ -0.48
SF3A1-201ENST00000215793 ZNF770Q6IQ21 691 aaPredicted RBP12.06□□□□□ -0.48
SF3A1-201ENST00000215793 TMEM108Q6UXF1 575 aa12.06□□□□□ -0.48
SF3A1-201ENST00000215793 TMEM92Q6UXU6 159 aa12.06□□□□□ -0.48
SF3A1-201ENST00000215793 C6orf201Q7Z4U5 140 aa12.06□□□□□ -0.48
SF3A1-201ENST00000215793 NPEPL1Q8NDH3 523 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms