RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SCRT1Q9BWW7 348 aa9.32□□□□□ -0.92
USP28-201ENST00000003302 A6NIZ1 184 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 PATE3B3GLJ2 98 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 PVALBP20472 110 aaPredicted RBP9.31□□□□□ -0.92
USP28-201ENST00000003302 FOXG1P55316 489 aaPredicted RBP9.31□□□□□ -0.92
USP28-201ENST00000003302 RAP1BP61224 184 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 RAP1AP62834 184 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 DEGS2Q6QHC5 323 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 SUMF1Q8NBK3 374 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 OR10A2Q9H208 303 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 PRELID3BQ9Y3B1 194 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 HSPB6O14558 160 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 TNFSF11O14788 317 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 FCGR3AP08637 254 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 RFPL3SP0C7P2 107 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 PPT1P50897 306 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 C9orf135Q5VTT2 229 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 ZNF774Q6NX45 483 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 SGK3Q96BR1 496 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 NMES1Q9C002 83 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 UCK1Q9HA47 277 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 ANAPC10Q9UM13 185 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 IGHV5-10-1A0A0J9YXX1 117 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 COLCA2A8K830 154 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 NPBWR2P48146 333 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 SNRPEP62304 92 aaKnown RBP9.31□□□□□ -0.92
USP28-201ENST00000003302 TLE1Q04724 770 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 IZUMO4Q1ZYL8 232 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 THEM4Q5T1C6 240 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 PRSS54Q6PEW0 395 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 OR2AJ1Q8NGZ0 328 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 PGAM5Q96HS1 289 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 A0A1W2PNV4 684 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 OR5AC1P0C628 307 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 TPT1P13693 172 aaKnown RBP9.31□□□□□ -0.92
USP28-201ENST00000003302 MPZP25189 248 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 THBS4P35443 961 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 CCL20P78556 96 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 HABP2Q14520 560 aaPredicted RBP9.31□□□□□ -0.92
USP28-201ENST00000003302 VAX1Q5SQQ9 334 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 RPUSD3Q6P087 351 aaKnown RBP9.31□□□□□ -0.92
USP28-201ENST00000003302 LPCAT3Q6P1A2 487 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 OR5L1Q8NGL2 311 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 OCSTAMPQ9BR26 566 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 PIGQQ9BRB3 760 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 TAF9BQ9HBM6 251 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 COA4Q9NYJ1 87 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 B3GALT1Q9Y5Z6 326 aa9.31□□□□□ -0.92
USP28-201ENST00000003302 A0A0A6YYH2 397 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 A6NJ64 397 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 FBP1P09467 338 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 RD3LP0DJH9 198 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 OR3A2P47893 321 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 C10orf91Q5T1B1 145 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 GGNBP1Q5YKI7 109 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 CDPF1Q6NVV7 123 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 Q6ZRG5 221 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 CALHM1Q8IU99 346 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 FAM89BQ8N5H3 189 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 ZNF160Q9HCG1 818 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 PARPBPQ9NWS1 579 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 MLXQ9UH92 298 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 AK3Q9UIJ7 227 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 A0A0J9YW62 118 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 MBPP02686 304 aaPredicted RBP9.3□□□□□ -0.92
USP28-201ENST00000003302 ACAA1P09110 424 aaPredicted RBP9.3□□□□□ -0.92
USP28-201ENST00000003302 TMEM225BP0DP42 221 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 B4GALT1P15291 398 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 DTWD2Q8NBA8 298 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 RAB33BQ9H082 229 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 hCG_1809904A0A1W2PP81 198 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 A0A1W2PR64 198 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 A0A1W2PRV1 198 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 ZIC3O60481 467 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 DUSP1P28562 367 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 DNM1P34Q6PK57 102 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 KCNG3Q8TAE7 436 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 RNF138Q8WVD3 245 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 PHYHIPLQ96FC7 376 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 USB1Q9BQ65 265 aaKnown RBP9.3□□□□□ -0.92
USP28-201ENST00000003302 SMOC1Q9H4F8 434 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 PLEK2Q9NYT0 353 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 ZNF175Q9Y473 711 aa9.3□□□□□ -0.92
USP28-201ENST00000003302 A6NLC8 198 aa9.29□□□□□ -0.92
USP28-201ENST00000003302 CEACAM18A8MTB9 384 aa9.29□□□□□ -0.92
USP28-201ENST00000003302 BCAT2O15382 392 aaPredicted RBP9.29□□□□□ -0.92
USP28-201ENST00000003302 NAT2P11245 290 aa9.29□□□□□ -0.92
USP28-201ENST00000003302 PPP1CCP36873 323 aaKnown RBP9.29□□□□□ -0.92
USP28-201ENST00000003302 RAB13P51153 203 aa9.29□□□□□ -0.92
USP28-201ENST00000003302 H3F3AP84243 136 aa9.29□□□□□ -0.92
USP28-201ENST00000003302 PJVKQ0ZLH3 352 aa9.29□□□□□ -0.92
USP28-201ENST00000003302 RNF141Q8WVD5 230 aa9.29□□□□□ -0.92
USP28-201ENST00000003302 RBMXL1Q96E39 390 aaKnown RBP9.29□□□□□ -0.92
USP28-201ENST00000003302 RARRES2Q99969 163 aa9.29□□□□□ -0.92
USP28-201ENST00000003302 PIEZO2Q9H5I5 2752 aa9.29□□□□□ -0.92
USP28-201ENST00000003302 IGLV3-12A0A075B6K2 115 aa9.29□□□□□ -0.92
USP28-201ENST00000003302 IGHV3-64DA0A0J9YX35 117 aa9.29□□□□□ -0.92
USP28-201ENST00000003302 CLDN15P56746 228 aa9.29□□□□□ -0.92
USP28-201ENST00000003302 IGSF11Q5DX21 431 aa9.29□□□□□ -0.92
USP28-201ENST00000003302 TMEM268Q5VZI3 342 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms