RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 PLATP00750 562 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 GSTP1P09211 210 aaKnown RBP13.59□□□□□ -0.23
CLN3-251ENST00000636853 CCL2P13500 99 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 CCNOP22674 350 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 FAM3AP98173 230 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 MEF2DQ14814 521 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 RNPS1Q15287 305 aaKnown RBP13.59□□□□□ -0.23
CLN3-251ENST00000636853 NRN1LQ496H8 165 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 C17orf107Q6ZR85 190 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 PRSS33Q8NF86 280 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 C12orf49Q9H741 205 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 GHRLQ9UBU3 117 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 CFAP47Q6ZTR5 3102 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 ARHGAP21Q5T5U3 1957 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 IGKV1-27A0A075B6S5 117 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 MFNGO00587 321 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 ANGPTL7O43827 346 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 SIX6O95475 246 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 PMP2P02689 132 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 TMEM225BP0DP42 221 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 ATPAF1Q5TC12 328 aaPredicted RBP13.59□□□□□ -0.23
CLN3-251ENST00000636853 PXDC1Q5TGL8 231 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 ZNF100Q8IYN0 542 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 FAM89BQ8N5H3 189 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 RNF122Q9H9V4 155 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 PRSS50Q9UI38 385 aa13.59□□□□□ -0.23
CLN3-251ENST00000636853 hCG_38984A0A1B0GV85 526 aa13.58□□□□□ -0.24
CLN3-251ENST00000636853 PRR33A8MZF0 331 aa13.58□□□□□ -0.24
CLN3-251ENST00000636853 SPRY1O43609 319 aaPredicted RBP13.58□□□□□ -0.24
CLN3-251ENST00000636853 MPC2O95563 127 aa13.58□□□□□ -0.24
CLN3-251ENST00000636853 OR4E1P0C645 316 aa13.58□□□□□ -0.24
CLN3-251ENST00000636853 IL32P24001 234 aa13.58□□□□□ -0.24
CLN3-251ENST00000636853 BLVRBP30043 206 aaPredicted RBP13.58□□□□□ -0.24
CLN3-251ENST00000636853 DHODHQ02127 395 aa13.58□□□□□ -0.24
CLN3-251ENST00000636853 RBPMSQ93062 196 aaKnown RBP13.58□□□□□ -0.24
CLN3-251ENST00000636853 MRGPRFQ96AM1 343 aa13.58□□□□□ -0.24
CLN3-251ENST00000636853 SPSB1Q96BD6 273 aa13.58□□□□□ -0.24
CLN3-251ENST00000636853 OR6C65A6NJZ3 312 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 TSPAN9O75954 239 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 NRASP01111 189 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 HOXD4P09016 255 aaPredicted RBP13.57□□□□□ -0.24
CLN3-251ENST00000636853 CD79AP11912 226 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 ZP3P21754 424 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 ARFRP1Q13795 201 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 NAXEQ8NCW5 288 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 PRRT1Q99946 306 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 DPCDQ9BVM2 203 aaPredicted RBP13.57□□□□□ -0.24
CLN3-251ENST00000636853 ZDHHC11Q9H8X9 412 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 C12orf4Q9NQ89 552 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 GLS2Q9UI32 602 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 VSIG4Q9Y279 399 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 PLEKHA6Q9Y2H5 1048 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 CNN3Q15417 329 aaKnown RBP13.57□□□□□ -0.24
CLN3-251ENST00000636853 FAM189A2Q15884 450 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 CLVS2Q5SYC1 327 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 OR2AK2Q8NG84 335 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 OR4K15Q8NH41 348 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 C1QTNF5Q9BXJ0 243 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 ALX4Q9H161 411 aaPredicted RBP13.57□□□□□ -0.24
CLN3-251ENST00000636853 RGCCQ9H4X1 137 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 SLC2A8Q9NY64 477 aa13.57□□□□□ -0.24
CLN3-251ENST00000636853 FOXI3A8MTJ6 420 aaPredicted RBP13.56□□□□□ -0.24
CLN3-251ENST00000636853 GOSR2O14653 212 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 SCO1O75880 301 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 GIPP09681 153 aaPredicted RBP13.56□□□□□ -0.24
CLN3-251ENST00000636853 ZNF81P51508 661 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 H2BFSP57053 126 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 STEAP2Q8NFT2 490 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 CCDC107Q8WV48 283 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 PIGCQ92535 297 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 FBXW5Q969U6 566 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 WBP1Q96G27 269 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 PRDM14Q9GZV8 571 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 ZNF391Q9UJN7 358 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 C5orf49A4QMS7 147 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 SLC22A20A6NK97 555 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 WISP2O76076 250 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 OR2A4O95047 310 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 HTR3BO95264 441 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 GABRR1P24046 479 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 SSTR2P30874 369 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 RBP2P50120 134 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 PNLIPRP3Q17RR3 467 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 MICBQ29980 383 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 TMEM42Q69YG0 159 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 MOB3CQ70IA8 216 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 BORCS8Q96FH0 119 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 OR2A7Q96R45 310 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 TM2D1Q9BX74 207 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 PECRQ9BY49 303 aa13.56□□□□□ -0.24
CLN3-251ENST00000636853 ZNF230Q9UIE0 474 aaPredicted RBP13.56□□□□□ -0.24
CLN3-251ENST00000636853 OR2AT4A6NND4 320 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 XRCC2O43543 280 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 IFNA6P05013 189 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 AGTR1P30556 359 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 RAB1AP62820 205 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 OR8B8Q15620 311 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 DCAF12L2Q5VW00 463 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 FTMTQ8N4E7 242 aa13.55□□□□□ -0.24
CLN3-251ENST00000636853 MAFIPQ8WZ33 124 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms