RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 TSEN15Q8WW01 171 aaKnown RBP17.02■□□□□ 0.32
PTCD3-220ENST00000627371 MSI2Q96DH6 328 aaKnown RBP17.02■□□□□ 0.32
PTCD3-220ENST00000627371 DHDHQ9UQ10 334 aa17.02■□□□□ 0.32
PTCD3-220ENST00000627371 ZNF281Q9Y2X9 895 aa17.02■□□□□ 0.32
PTCD3-220ENST00000627371 LSM2Q9Y333 95 aaKnown RBP17.02■□□□□ 0.32
PTCD3-220ENST00000627371 SRRM5B3KS81 715 aa17.01■□□□□ 0.31
PTCD3-220ENST00000627371 FAM157AC9JC47 383 aa17.01■□□□□ 0.31
PTCD3-220ENST00000627371 LGALS8O00214 317 aa17.01■□□□□ 0.31
PTCD3-220ENST00000627371 ZNF16P17020 682 aaPredicted RBP17.01■□□□□ 0.31
PTCD3-220ENST00000627371 EGR1P18146 543 aa17.01■□□□□ 0.31
PTCD3-220ENST00000627371 CD80P33681 288 aa17.01■□□□□ 0.31
PTCD3-220ENST00000627371 BDH1Q02338 343 aa17.01■□□□□ 0.31
PTCD3-220ENST00000627371 ACSM1Q08AH1 577 aa17.01■□□□□ 0.31
PTCD3-220ENST00000627371 ZNF573Q86YE8 665 aa17.01■□□□□ 0.31
PTCD3-220ENST00000627371 BOLLQ8N9W6 283 aaKnown RBP17.01■□□□□ 0.31
PTCD3-220ENST00000627371 C19orf18Q8NEA5 215 aa17.01■□□□□ 0.31
PTCD3-220ENST00000627371 GPR148Q8TDV2 347 aa17.01■□□□□ 0.31
PTCD3-220ENST00000627371 PGLYRP3Q96LB9 341 aa17.01■□□□□ 0.31
PTCD3-220ENST00000627371 TMEM246Q9BRR3 403 aa17.01■□□□□ 0.31
PTCD3-220ENST00000627371 PATZ1Q9HBE1 687 aaKnown RBP17.01■□□□□ 0.31
PTCD3-220ENST00000627371 PCDHB10Q9UN67 800 aa17.01■□□□□ 0.31
PTCD3-220ENST00000627371 NSD1Q96L73 2696 aaPredicted RBP17.01■□□□□ 0.31
PTCD3-220ENST00000627371 HIVEP2P31629 2446 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 OOEPA6NGQ2 149 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 CEACAM18A8MTB9 384 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 PLPP2O43688 288 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 CD1AP06126 327 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 HAAOP46952 286 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 FUT6P51993 359 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 GABARAPL2P60520 117 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 SPHARQ15513 63 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 TEX36Q5VZQ5 186 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 HAGHLQ6PII5 290 aaPredicted RBP17■□□□□ 0.31
PTCD3-220ENST00000627371 PARP16Q8N5Y8 322 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 LINC01356Q8N9X3 169 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 TRMT10AQ8TBZ6 339 aaKnown RBP17■□□□□ 0.31
PTCD3-220ENST00000627371 NPRL2Q8WTW4 380 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 AQP3Q92482 292 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 GHSRQ92847 366 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 OR5M11Q96RB7 305 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 CCDC90BQ9GZT6 254 aa17■□□□□ 0.31
PTCD3-220ENST00000627371 ANK3Q12955 4377 aaKnown RBP17■□□□□ 0.31
PTCD3-220ENST00000627371 TRAV38-1A0A0B4J264 116 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 IGKV1-9A0A0C4DH69 117 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 FAM230AA0A1W2PPH8 454 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 B4DSR2 109 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 F5H0A9 414 aaPredicted RBP16.99■□□□□ 0.31
PTCD3-220ENST00000627371 C3orf80F5H4A9 247 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.99■□□□□ 0.31
PTCD3-220ENST00000627371 J3QT63 122 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 RHBDL1O75783 438 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 ATF1P18846 271 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 EEF1B2P24534 225 aaKnown RBP16.99■□□□□ 0.31
PTCD3-220ENST00000627371 MED22Q15528 200 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 KCNJ8Q15842 424 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 YIF1BQ5BJH7 314 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 SFRP4Q6FHJ7 346 aaPredicted RBP16.99■□□□□ 0.31
PTCD3-220ENST00000627371 DCDC5Q6ZRR9 648 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 SERPINA12Q8IW75 414 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 DNAAF1Q8NEP3 725 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 DEFB108BQ8NET1 73 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 SPSB1Q96BD6 273 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 BORCS8Q96FH0 119 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 ZCCHC4Q9H5U6 513 aa16.99■□□□□ 0.31
PTCD3-220ENST00000627371 ARHGAP32A7KAX9 2087 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 PNMA8CA0A1B0GUJ8 204 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 CD2P06729 351 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 OCM2P0CE71 109 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 CELP19835 753 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 PRKACBP22694 351 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 CPT2P23786 658 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 MPZP25189 248 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 AZGP1P25311 298 aaKnown RBP16.98■□□□□ 0.31
PTCD3-220ENST00000627371 SOX2P48431 317 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 Q71RC1 249 aaPredicted RBP16.98■□□□□ 0.31
PTCD3-220ENST00000627371 OR5D14Q8NGL3 314 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 OR13C9Q8NGT0 318 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 ZNF671Q8TAW3 534 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 YTHDF1Q9BYJ9 559 aaKnown RBP16.98■□□□□ 0.31
PTCD3-220ENST00000627371 PKIBQ9C010 78 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 MIOXQ9UGB7 285 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 POLDIP2Q9Y2S7 368 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 WNK2Q9Y3S1 2297 aa16.98■□□□□ 0.31
PTCD3-220ENST00000627371 SONP18583 2426 aaKnown RBP16.97■□□□□ 0.31
PTCD3-220ENST00000627371 IGKV1-27A0A075B6S5 117 aa16.97■□□□□ 0.31
PTCD3-220ENST00000627371 TRBV5-5A0A0J9YX44 114 aa16.97■□□□□ 0.31
PTCD3-220ENST00000627371 AKR7A2O43488 359 aa16.97■□□□□ 0.31
PTCD3-220ENST00000627371 ALX3O95076 343 aa16.97■□□□□ 0.31
PTCD3-220ENST00000627371 TGFAP01135 160 aa16.97■□□□□ 0.31
PTCD3-220ENST00000627371 RPS2P15880 293 aaKnown RBP16.97■□□□□ 0.31
PTCD3-220ENST00000627371 MUC1P15941 1255 aaPredicted RBP16.97■□□□□ 0.31
PTCD3-220ENST00000627371 RPS11P62280 158 aaKnown RBP eCLIP16.97■□□□□ 0.31
PTCD3-220ENST00000627371 TBCEQ15813 527 aaPredicted RBP16.97■□□□□ 0.31
PTCD3-220ENST00000627371 MICBQ29980 383 aa16.97■□□□□ 0.31
PTCD3-220ENST00000627371 FAM166AQ6J272 317 aa16.97■□□□□ 0.31
PTCD3-220ENST00000627371 FAM90A1Q86YD7 464 aa16.97■□□□□ 0.31
PTCD3-220ENST00000627371 CALHM1Q8IU99 346 aa16.97■□□□□ 0.31
PTCD3-220ENST00000627371 OR13C5Q8NGS8 318 aa16.97■□□□□ 0.31
PTCD3-220ENST00000627371 TMEM106AQ96A25 262 aa16.97■□□□□ 0.31
PTCD3-220ENST00000627371 C12orf43Q96C57 262 aaKnown RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms