RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 ST8SIA4Q92187 359 aa13.28□□□□□ -0.28
BRCA1-228ENST00000618469 C12orf43Q96C57 262 aaKnown RBP13.28□□□□□ -0.28
BRCA1-228ENST00000618469 CCL13Q99616 98 aa13.28□□□□□ -0.28
BRCA1-228ENST00000618469 SLC6A7Q99884 636 aa13.28□□□□□ -0.28
BRCA1-228ENST00000618469 ADI1Q9BV57 179 aa13.28□□□□□ -0.28
BRCA1-228ENST00000618469 OR51I2Q9H344 312 aa13.28□□□□□ -0.28
BRCA1-228ENST00000618469 SNTG1Q9NSN8 517 aa13.28□□□□□ -0.28
BRCA1-228ENST00000618469 DUX4Q9UBX2 424 aa13.28□□□□□ -0.28
BRCA1-228ENST00000618469 EXOGQ9Y2C4 368 aaKnown RBP13.28□□□□□ -0.28
BRCA1-228ENST00000618469 PCDHGB1Q9Y5G3 927 aa13.28□□□□□ -0.28
BRCA1-228ENST00000618469 NKX6-3A6NJ46 265 aa13.27□□□□□ -0.29
BRCA1-228ENST00000618469 DVL1O14640 695 aa13.27□□□□□ -0.29
BRCA1-228ENST00000618469 TNFRSF13BO14836 293 aaPredicted RBP13.27□□□□□ -0.29
BRCA1-228ENST00000618469 OR12D2P58182 307 aa13.27□□□□□ -0.29
BRCA1-228ENST00000618469 ACTG1P63261 375 aa13.27□□□□□ -0.29
BRCA1-228ENST00000618469 PAX8Q06710 450 aa13.27□□□□□ -0.29
BRCA1-228ENST00000618469 TMEM42Q69YG0 159 aa13.27□□□□□ -0.29
BRCA1-228ENST00000618469 STUMQ69YW2 141 aa13.27□□□□□ -0.29
BRCA1-228ENST00000618469 Q6ZSR3 168 aa13.27□□□□□ -0.29
BRCA1-228ENST00000618469 SLC36A1Q7Z2H8 476 aa13.27□□□□□ -0.29
BRCA1-228ENST00000618469 C3orf56Q8N813 242 aa13.27□□□□□ -0.29
BRCA1-228ENST00000618469 ZNF418Q8TF45 676 aaPredicted RBP13.27□□□□□ -0.29
BRCA1-228ENST00000618469 CYGBQ8WWM9 190 aa13.27□□□□□ -0.29
BRCA1-228ENST00000618469 C22orf15Q8WYQ4 148 aa13.27□□□□□ -0.29
BRCA1-228ENST00000618469 MRPL48Q96GC5 212 aaKnown RBP13.27□□□□□ -0.29
BRCA1-228ENST00000618469 C4orf36Q96KX1 117 aa13.27□□□□□ -0.29
BRCA1-228ENST00000618469 ALG8Q9BVK2 526 aa13.27□□□□□ -0.29
BRCA1-228ENST00000618469 RASSF4Q9H2L5 321 aa13.27□□□□□ -0.29
BRCA1-228ENST00000618469 IGHV3OR16-10A0A075B7F0 116 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 TRAV40A0A0B4J280 105 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 ANKRD61A6NGH8 418 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 J3QLW9 94 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 FCN3O75636 299 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 CLIC3O95833 236 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 FADS2O95864 444 aaKnown RBP13.26□□□□□ -0.29
BRCA1-228ENST00000618469 ZNF19P17023 458 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 GLRA1P23415 457 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 IKZF1Q13422 519 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 KLF17Q5JT82 389 aaPredicted RBP13.26□□□□□ -0.29
BRCA1-228ENST00000618469 CD276Q5ZPR3 534 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 FGFRL1Q8N441 504 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 PACRGLQ8N7B6 248 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 OR5T2Q8NGG2 359 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 OR2G2Q8NGZ5 317 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 TRMT10AQ8TBZ6 339 aaKnown RBP13.26□□□□□ -0.29
BRCA1-228ENST00000618469 NPRL2Q8WTW4 380 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 AQP3Q92482 292 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 RNF166Q96A37 237 aaPredicted RBP13.26□□□□□ -0.29
BRCA1-228ENST00000618469 C8orf4Q9NR00 106 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 KAAG1Q9UBP8 84 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 MYRFQ9Y2G1 1151 aa13.26□□□□□ -0.29
BRCA1-228ENST00000618469 RPL36Q9Y3U8 105 aaKnown RBP13.26□□□□□ -0.29
BRCA1-228ENST00000618469 KIR2DS1A0A191URI9 304 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 J3QT63 122 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 IGHA1P01876 353 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 TFF1P04155 84 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 HTR1AP08908 422 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 IGHV4-38-2P0DP08 117 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 SELLP14151 372 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 HAAOP46952 286 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 NANOS3P60323 173 aaKnown RBP13.25□□□□□ -0.29
BRCA1-228ENST00000618469 FGF12P61328 243 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 RAB40BQ12829 278 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 SMN1Q16637 294 aaKnown RBP13.25□□□□□ -0.29
BRCA1-228ENST00000618469 ZNF691Q5VV52 312 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 KCTD20Q7Z5Y7 419 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 LHFPL3Q86UP9 236 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 RDH10Q8IZV5 341 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 CCDC54Q8NEL0 328 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 OR52I1Q8NGK6 324 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 ZNF671Q8TAW3 534 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 CNIH3Q8TBE1 160 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 TMIGD2Q96BF3 282 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 UPRTQ96BW1 309 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 PELI1Q96FA3 418 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 SUCNR1Q9BXA5 334 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 CHST5Q9GZS9 411 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 NLKQ9UBE8 527 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 NUP50Q9UKX7 468 aa13.25□□□□□ -0.29
BRCA1-228ENST00000618469 PQLC2LA1A4F0 135 aa13.24□□□□□ -0.29
BRCA1-228ENST00000618469 SYNGR1O43759 233 aa13.24□□□□□ -0.29
BRCA1-228ENST00000618469 WBP4O75554 376 aaKnown RBP13.24□□□□□ -0.29
BRCA1-228ENST00000618469 GATBO75879 557 aaKnown RBP13.24□□□□□ -0.29
BRCA1-228ENST00000618469 GABPB1Q06547 395 aaPredicted RBP13.24□□□□□ -0.29
BRCA1-228ENST00000618469 GALEQ14376 348 aa13.24□□□□□ -0.29
BRCA1-228ENST00000618469 BTN2A1Q7KYR7 527 aa13.24□□□□□ -0.29
BRCA1-228ENST00000618469 ZNF573Q86YE8 665 aa13.24□□□□□ -0.29
BRCA1-228ENST00000618469 PNLDC1Q8NA58 520 aaKnown RBP13.24□□□□□ -0.29
BRCA1-228ENST00000618469 ANGPTL6Q8NI99 470 aa13.24□□□□□ -0.29
BRCA1-228ENST00000618469 ZNF488Q96MN9 340 aa13.24□□□□□ -0.29
BRCA1-228ENST00000618469 GAFA1Q96PS6 74 aa13.24□□□□□ -0.29
BRCA1-228ENST00000618469 PCGF1Q9BSM1 259 aa13.24□□□□□ -0.29
BRCA1-228ENST00000618469 INPP5EQ9NRR6 644 aa13.24□□□□□ -0.29
BRCA1-228ENST00000618469 ERVK13-1Q9NX77 482 aa13.24□□□□□ -0.29
BRCA1-228ENST00000618469 FRRS1LQ9P0K9 344 aa13.24□□□□□ -0.29
BRCA1-228ENST00000618469 ZNF69Q9UC07 566 aa13.24□□□□□ -0.29
BRCA1-228ENST00000618469 POLDIP2Q9Y2S7 368 aa13.24□□□□□ -0.29
BRCA1-228ENST00000618469 MGAM2Q2M2H8 2515 aa13.23□□□□□ -0.29
BRCA1-228ENST00000618469 TGP01266 2768 aa13.23□□□□□ -0.29
BRCA1-228ENST00000618469 A0A0A6YYJ9 748 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms