RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 OR4C11Q6IEV9 310 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 MBOAT2Q6ZWT7 520 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 ZDHHC22Q8N966 263 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 OR5L1Q8NGL2 311 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 OR10G6Q8NH81 332 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 MOB3AQ96BX8 217 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 SLC6A7Q99884 636 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 TTTY10Q9BZA0 68 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 MAGT1Q9H0U3 335 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 ZNF552Q9H707 407 aaPredicted RBP9.07□□□□□ -0.96
VPS39-214ENST00000614932 MKKSQ9NPJ1 570 aaPredicted RBP9.07□□□□□ -0.96
VPS39-214ENST00000614932 TMEM242Q9NWH2 141 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 SOHLH2Q9NX45 425 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 PPIAL4AQ9Y536 164 aa9.07□□□□□ -0.96
VPS39-214ENST00000614932 ZNF736B4DX44 427 aaPredicted RBP9.06□□□□□ -0.96
VPS39-214ENST00000614932 ADH1BP00325 375 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 PEBP1P30086 187 aaKnown RBP9.06□□□□□ -0.96
VPS39-214ENST00000614932 RPS20P60866 119 aaKnown RBP9.06□□□□□ -0.96
VPS39-214ENST00000614932 HIST1H3AP68431 136 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 MMDQ15546 238 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 STAC2Q6ZMT1 411 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 TMPRSS12Q86WS5 348 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 OR4N5Q8IXE1 308 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 METTL27Q8N6F8 245 aaPredicted RBP9.06□□□□□ -0.96
VPS39-214ENST00000614932 OR56A1Q8NGH5 318 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 OR13C9Q8NGT0 318 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 GLIPR2Q9H4G4 154 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 C6orf106Q9H6K1 298 aaPredicted RBP9.06□□□□□ -0.96
VPS39-214ENST00000614932 SLC2A9Q9NRM0 540 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 SIRT3Q9NTG7 399 aaPredicted RBP9.06□□□□□ -0.96
VPS39-214ENST00000614932 ZCCHC3Q9NUD5 404 aaKnown RBP9.06□□□□□ -0.96
VPS39-214ENST00000614932 ZNF701Q9NV72 531 aaPredicted RBP9.06□□□□□ -0.96
VPS39-214ENST00000614932 CLEC1BQ9P126 229 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 SIGLEC7Q9Y286 467 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 STRAPQ9Y3F4 350 aaKnown RBP9.06□□□□□ -0.96
VPS39-214ENST00000614932 TRAV30A0A087WSZ9 112 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 A0A1W2PQF6 199 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 PRAMEF27A3QJZ7 478 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 HMGN4O00479 90 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 FRS3O43559 492 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 DNAJB6O75190 326 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 CYB5AP00167 134 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 SEC11BP0C7V7 166 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 TMEM225BP0DP42 221 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 NTSR1P30989 418 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 ACAA2P42765 397 aaKnown RBP9.06□□□□□ -0.96
VPS39-214ENST00000614932 EIF2B1Q14232 305 aaKnown RBP9.06□□□□□ -0.96
VPS39-214ENST00000614932 LASP1Q14847 261 aaKnown RBP9.06□□□□□ -0.96
VPS39-214ENST00000614932 P2RY6Q15077 328 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 TMEM183BQ1AE95 376 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 SYS1Q8N2H4 156 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 GPR119Q8TDV5 335 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 OR1E3Q8WZA6 343 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 NEURL3Q96EH8 262 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 ZNF700Q9H0M5 742 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.06□□□□□ -0.96
VPS39-214ENST00000614932 KCNE3Q9Y6H6 103 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 ATG2AQ2TAZ0 1938 aa9.06□□□□□ -0.96
VPS39-214ENST00000614932 CLEC18AA5D8T8 446 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 K7ERU9 68 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 WDR1O75083 606 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 MMP23AO75900 390 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 PRH1P02810 166 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 STAG3L3P0CL85 134 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 ARR3P36575 388 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 ID2Q02363 134 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 SMIM21Q3B7S5 101 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 COX18Q8N8Q8 333 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 CLEC18CQ8NCF0 446 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 OR2M7Q8NG81 312 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 TMEM234Q8WY98 164 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 FBXL17Q9UF56 701 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 ST3GAL6Q9Y274 331 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 MEMO1Q9Y316 297 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 TMED7Q9Y3B3 224 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 LOC100289279A0A1B0GTE1 492 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 RBFOX3A6NFN3 312 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 SRP19P09132 144 aaKnown RBP9.05□□□□□ -0.96
VPS39-214ENST00000614932 ERGP11308 486 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 AKR1C4P17516 323 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 FHITP49789 147 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 EFNB2P52799 333 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 CLDN18P56856 261 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 ADAM8P78325 824 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 NFATC4Q14934 902 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 RAB42Q8N4Z0 105 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 CYB561A3Q8NBI2 242 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 SLC2A12Q8TD20 617 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 ZCCHC14Q8WYQ9 949 aaKnown RBP9.05□□□□□ -0.96
VPS39-214ENST00000614932 SDSLQ96GA7 329 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 PELI2Q9HAT8 420 aa9.05□□□□□ -0.96
VPS39-214ENST00000614932 IGHV2OR16-5A0A0B4J2B6 119 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 PRSS38A1L453 326 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 CSN2P05814 226 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 ADRA2CP18825 462 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 BTN3A2P78410 334 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 SCGB2A2Q13296 93 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 RAB32Q13637 225 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 MORN2Q502X0 79 aa9.04□□□□□ -0.96
VPS39-214ENST00000614932 ZNF66Q6ZN08 573 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms