RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 MYRFQ9Y2G1 1151 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 AUP1Q9Y679 476 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 NF1P21359 2839 aa16.17■□□□□ 0.18
UPF1-212ENST00000601689 LOC105371242A0A075B767 164 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 LOC107986453A0A1B0GWG9 222 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 CLIC3O95833 236 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 LIPFP07098 398 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 HAAOP46952 286 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 SEC61A1P61619 476 aaKnown RBP16.16■□□□□ 0.18
UPF1-212ENST00000601689 ADARB1P78563 741 aaKnown RBP16.16■□□□□ 0.18
UPF1-212ENST00000601689 ARMCX4Q5H9R4 360 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 WDR25Q64LD2 544 aaPredicted RBP16.16■□□□□ 0.18
UPF1-212ENST00000601689 TMEM42Q69YG0 159 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 HAGHLQ6PII5 290 aaPredicted RBP16.16■□□□□ 0.18
UPF1-212ENST00000601689 PRIMA1Q86XR5 153 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 PRSS35Q8N3Z0 413 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 CNIH3Q8TBE1 160 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 PELI1Q96FA3 418 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 TMPRSS13Q9BYE2 586 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 DNTTIP1Q9H147 329 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 RASL12Q9NYN1 266 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 FRRS1LQ9P0K9 344 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 KAAG1Q9UBP8 84 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 EXOSC1Q9Y3B2 195 aaKnown RBP16.16■□□□□ 0.18
UPF1-212ENST00000601689 INSIG2Q9Y5U4 225 aa16.16■□□□□ 0.18
UPF1-212ENST00000601689 ANK3Q12955 4377 aaKnown RBP16.15■□□□□ 0.18
UPF1-212ENST00000601689 A6NIN4 97 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 TMEM212A6NML5 194 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 H3BSH0 61 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 GPR37O15354 613 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 AKR7A2O43488 359 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 NDUFB3O43676 98 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 ENSAO43768 121 aaKnown RBP16.15■□□□□ 0.18
UPF1-212ENST00000601689 WBP4O75554 376 aaKnown RBP16.15■□□□□ 0.18
UPF1-212ENST00000601689 ECDO95905 644 aaPredicted RBP16.15■□□□□ 0.18
UPF1-212ENST00000601689 FUT6P51993 359 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 GMFBP60983 142 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 LRRC10Q5BKY1 277 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 LYPD2Q6UXB3 125 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 FAM90A1Q86YD7 464 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 PNLDC1Q8NA58 520 aaKnown RBP16.15■□□□□ 0.18
UPF1-212ENST00000601689 BORCS8Q96FH0 119 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 TMEM80Q96HE8 168 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 MED30Q96HR3 178 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 OCEL1Q9H607 264 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 CAB39Q9Y376 341 aaPredicted RBP16.15■□□□□ 0.18
UPF1-212ENST00000601689 JMJD1CQ15652 2540 aa16.15■□□□□ 0.18
UPF1-212ENST00000601689 IGHV3OR15-7A0A075B7D8 119 aa16.14■□□□□ 0.17
UPF1-212ENST00000601689 FAM230AA0A1W2PPH8 454 aa16.14■□□□□ 0.17
UPF1-212ENST00000601689 EFCAB10A6NFE3 127 aa16.14■□□□□ 0.17
UPF1-212ENST00000601689 J3QT63 122 aa16.14■□□□□ 0.17
UPF1-212ENST00000601689 CYB5AP00167 134 aa16.14■□□□□ 0.17
UPF1-212ENST00000601689 EGR1P18146 543 aa16.14■□□□□ 0.17
UPF1-212ENST00000601689 FPR2P25090 351 aa16.14■□□□□ 0.17
UPF1-212ENST00000601689 SMN1Q16637 294 aaKnown RBP16.14■□□□□ 0.17
UPF1-212ENST00000601689 C1QL2Q7Z5L3 287 aa16.14■□□□□ 0.17
UPF1-212ENST00000601689 OR13C3Q8NGS6 347 aa16.14■□□□□ 0.17
UPF1-212ENST00000601689 OR5AK2Q8NH90 309 aa16.14■□□□□ 0.17
UPF1-212ENST00000601689 NUDT16L1Q9BRJ7 211 aaKnown RBP16.14■□□□□ 0.17
UPF1-212ENST00000601689 JAM3Q9BX67 310 aa16.14■□□□□ 0.17
UPF1-212ENST00000601689 CHST5Q9GZS9 411 aa16.14■□□□□ 0.17
UPF1-212ENST00000601689 MMP26Q9NRE1 261 aa16.14■□□□□ 0.17
UPF1-212ENST00000601689 NLKQ9UBE8 527 aa16.14■□□□□ 0.17
UPF1-212ENST00000601689 IGHV2-70DA0A0C4DH43 119 aa16.13■□□□□ 0.17
UPF1-212ENST00000601689 TRBV2A0A0J9YWF9 115 aa16.13■□□□□ 0.17
UPF1-212ENST00000601689 KIAA1324LA8MWY0 1029 aaPredicted RBP16.13■□□□□ 0.17
UPF1-212ENST00000601689 H0YJX3 145 aa16.13■□□□□ 0.17
UPF1-212ENST00000601689 TRAPPC2LH3BP13 241 aa16.13■□□□□ 0.17
UPF1-212ENST00000601689 TCF21O43680 179 aa16.13■□□□□ 0.17
UPF1-212ENST00000601689 PRKACBP22694 351 aa16.13■□□□□ 0.17
UPF1-212ENST00000601689 KIR3DL2P43630 455 aa16.13■□□□□ 0.17
UPF1-212ENST00000601689 ATP1B3P54709 279 aa16.13■□□□□ 0.17
UPF1-212ENST00000601689 SMIM21Q3B7S5 101 aa16.13■□□□□ 0.17
UPF1-212ENST00000601689 CCDC58Q4VC31 144 aa16.13■□□□□ 0.17
UPF1-212ENST00000601689 RDH10Q8IZV5 341 aa16.13■□□□□ 0.17
UPF1-212ENST00000601689 TRMT10AQ8TBZ6 339 aaKnown RBP16.13■□□□□ 0.17
UPF1-212ENST00000601689 ZNF418Q8TF45 676 aaPredicted RBP16.13■□□□□ 0.17
UPF1-212ENST00000601689 AQP3Q92482 292 aa16.13■□□□□ 0.17
UPF1-212ENST00000601689 DIMT1Q9UNQ2 313 aaKnown RBP16.13■□□□□ 0.17
UPF1-212ENST00000601689 KIR2DS1A0A191URI9 304 aa16.12■□□□□ 0.17
UPF1-212ENST00000601689 DVL1O14640 695 aa16.12■□□□□ 0.17
UPF1-212ENST00000601689 PPIAL4GP0DN37 164 aa16.12■□□□□ 0.17
UPF1-212ENST00000601689 GABRA2P47869 451 aa16.12■□□□□ 0.17
UPF1-212ENST00000601689 TGM4P49221 684 aa16.12■□□□□ 0.17
UPF1-212ENST00000601689 RBP2P50120 134 aa16.12■□□□□ 0.17
UPF1-212ENST00000601689 DMRTC1Q5HYR2 192 aa16.12■□□□□ 0.17
UPF1-212ENST00000601689 STX19Q8N4C7 294 aa16.12■□□□□ 0.17
UPF1-212ENST00000601689 ST8SIA4Q92187 359 aa16.12■□□□□ 0.17
UPF1-212ENST00000601689 FGGYQ96C11 551 aa16.12■□□□□ 0.17
UPF1-212ENST00000601689 CCL13Q99616 98 aa16.12■□□□□ 0.17
UPF1-212ENST00000601689 PKIBQ9C010 78 aa16.12■□□□□ 0.17
UPF1-212ENST00000601689 ISG20L2Q9H9L3 353 aaKnown RBP16.12■□□□□ 0.17
UPF1-212ENST00000601689 SNTG1Q9NSN8 517 aa16.12■□□□□ 0.17
UPF1-212ENST00000601689 CNOT2Q9NZN8 540 aaKnown RBP16.12■□□□□ 0.17
UPF1-212ENST00000601689 PQLC2LA1A4F0 135 aa16.11■□□□□ 0.17
UPF1-212ENST00000601689 OR2AT4A6NND4 320 aa16.11■□□□□ 0.17
UPF1-212ENST00000601689 RHBDL1O75783 438 aa16.11■□□□□ 0.17
UPF1-212ENST00000601689 NXPH2O95156 264 aa16.11■□□□□ 0.17
UPF1-212ENST00000601689 EPHA1P21709 976 aa16.11■□□□□ 0.17
UPF1-212ENST00000601689 NANOS3P60323 173 aaKnown RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms