RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 GCSAMQ8N6F7 178 aa16.25■□□□□ 0.19
UPF1-209ENST00000600310 MAPK1IP1LQ8NDC0 245 aa16.25■□□□□ 0.19
UPF1-209ENST00000600310 OR10Z1Q8NGY1 313 aa16.25■□□□□ 0.19
UPF1-209ENST00000600310 TRMT10AQ8TBZ6 339 aaKnown RBP16.25■□□□□ 0.19
UPF1-209ENST00000600310 UFD1Q92890 307 aa16.25■□□□□ 0.19
UPF1-209ENST00000600310 TMEM106AQ96A25 262 aa16.25■□□□□ 0.19
UPF1-209ENST00000600310 SPSB1Q96BD6 273 aa16.25■□□□□ 0.19
UPF1-209ENST00000600310 PPIAL4EA0A075B759 164 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 FAM230AA0A1W2PPH8 454 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 PPIAL4DF5H284 164 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 SMAD7O15105 426 aaKnown RBP16.24■□□□□ 0.19
UPF1-209ENST00000600310 INHBBP09529 407 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 PPIAL4FP0DN26 164 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 CPEP16870 476 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 MDH2P40926 338 aaKnown RBP16.24■□□□□ 0.19
UPF1-209ENST00000600310 ZMYND11Q15326 602 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 TMEM155Q4W5P6 130 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 ASPHD2Q6ICH7 369 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 ZNF529Q6P280 563 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 HAGHLQ6PII5 290 aaPredicted RBP16.24■□□□□ 0.19
UPF1-209ENST00000600310 MS4A15Q8N5U1 240 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 OR13C9Q8NGT0 318 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 CLDND2Q8NHS1 167 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 NPRL2Q8WTW4 380 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 LRRC29Q8WV35 223 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 AQP3Q92482 292 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 BORCS8Q96FH0 119 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 OPALINQ96PE5 141 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 METTL17Q9H7H0 456 aaPredicted RBP16.24■□□□□ 0.19
UPF1-209ENST00000600310 PPIAL4AQ9Y536 164 aa16.24■□□□□ 0.19
UPF1-209ENST00000600310 ISPDA4D126 451 aa16.23■□□□□ 0.19
UPF1-209ENST00000600310 ZNF205O95201 554 aa16.23■□□□□ 0.19
UPF1-209ENST00000600310 PCMT1P22061 227 aa16.23■□□□□ 0.19
UPF1-209ENST00000600310 AZGP1P25311 298 aaKnown RBP16.23■□□□□ 0.19
UPF1-209ENST00000600310 HAAOP46952 286 aa16.23■□□□□ 0.19
UPF1-209ENST00000600310 LIPKQ5VXJ0 399 aa16.23■□□□□ 0.19
UPF1-209ENST00000600310 ZNF671Q8TAW3 534 aa16.23■□□□□ 0.19
UPF1-209ENST00000600310 FCGR1BQ92637 280 aa16.23■□□□□ 0.19
UPF1-209ENST00000600310 NARFLQ9H6Q4 476 aa16.23■□□□□ 0.19
UPF1-209ENST00000600310 TMEM165Q9HC07 324 aa16.23■□□□□ 0.19
UPF1-209ENST00000600310 NEK6Q9HC98 313 aa16.23■□□□□ 0.19
UPF1-209ENST00000600310 ZFHX3Q15911 3703 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 MED13LQ71F56 2210 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 IGKV1-27A0A075B6S5 117 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 TRBV5-7A0A0A0MS05 114 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 SRRM5B3KS81 715 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 ZNF879B4DU55 563 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 J3QT63 122 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 LGALS8O00214 317 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 SULT1B1O43704 296 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 RHBDL1O75783 438 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 TNFAIP8O95379 198 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 OCMP0CE72 109 aaPredicted RBP16.22■□□□□ 0.19
UPF1-209ENST00000600310 EGR1P18146 543 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 MPZP25189 248 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 RBP2P50120 134 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 LMO4P61968 165 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 HOXA4Q00056 320 aaPredicted RBP16.22■□□□□ 0.19
UPF1-209ENST00000600310 UBE2UQ5VVX9 321 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 LHFPL2Q6ZUX7 228 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 PHC2Q8IXK0 858 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 MUC20Q8N307 709 aaPredicted RBP16.22■□□□□ 0.19
UPF1-209ENST00000600310 SPICQ8N5J4 248 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 BOLLQ8N9W6 283 aaKnown RBP16.22■□□□□ 0.19
UPF1-209ENST00000600310 THRSPQ92748 146 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 OR14A2Q96R54 314 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 GAL3ST1Q99999 423 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 PKIBQ9C010 78 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 TAS2R4Q9NYW5 299 aa16.22■□□□□ 0.19
UPF1-209ENST00000600310 GPX5O75715 221 aa16.21■□□□□ 0.19
UPF1-209ENST00000600310 RAB3AP20336 220 aa16.21■□□□□ 0.19
UPF1-209ENST00000600310 CD80P33681 288 aa16.21■□□□□ 0.19
UPF1-209ENST00000600310 ATP1B3P54709 279 aa16.21■□□□□ 0.19
UPF1-209ENST00000600310 MTCP1P56278 107 aa16.21■□□□□ 0.19
UPF1-209ENST00000600310 TMEM249Q2WGJ8 235 aa16.21■□□□□ 0.19
UPF1-209ENST00000600310 ZNF404Q494X3 552 aa16.21■□□□□ 0.19
UPF1-209ENST00000600310 ARMCX4Q5H9R4 360 aa16.21■□□□□ 0.19
UPF1-209ENST00000600310 UNQ9370/PRO34162Q6UXP9 181 aa16.21■□□□□ 0.19
UPF1-209ENST00000600310 ANGPTL5Q86XS5 388 aa16.21■□□□□ 0.19
UPF1-209ENST00000600310 CALHM1Q8IU99 346 aa16.21■□□□□ 0.19
UPF1-209ENST00000600310 OR51A2Q8NGJ7 313 aa16.21■□□□□ 0.19
UPF1-209ENST00000600310 DERL3Q96Q80 235 aa16.21■□□□□ 0.19
UPF1-209ENST00000600310 TMED9Q9BVK6 235 aa16.21■□□□□ 0.19
UPF1-209ENST00000600310 POLDIP2Q9Y2S7 368 aa16.21■□□□□ 0.19
UPF1-209ENST00000600310 SETD2Q9BYW2 2564 aaPredicted RBP16.21■□□□□ 0.18
UPF1-209ENST00000600310 TRAV38-1A0A0B4J264 116 aa16.2■□□□□ 0.18
UPF1-209ENST00000600310 OOEPA6NGQ2 149 aa16.2■□□□□ 0.18
UPF1-209ENST00000600310 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.2■□□□□ 0.18
UPF1-209ENST00000600310 PIN1P1O15428 100 aa16.2■□□□□ 0.18
UPF1-209ENST00000600310 SYNGR1O43759 233 aa16.2■□□□□ 0.18
UPF1-209ENST00000600310 HEXAP06865 529 aa16.2■□□□□ 0.18
UPF1-209ENST00000600310 ACAA1P09110 424 aaPredicted RBP16.2■□□□□ 0.18
UPF1-209ENST00000600310 IGFBP3P17936 291 aaPredicted RBP16.2■□□□□ 0.18
UPF1-209ENST00000600310 MAPK3P27361 379 aaPredicted RBP16.2■□□□□ 0.18
UPF1-209ENST00000600310 IL2RGP31785 369 aa16.2■□□□□ 0.18
UPF1-209ENST00000600310 IL24Q13007 206 aa16.2■□□□□ 0.18
UPF1-209ENST00000600310 TRAM1Q15629 374 aa16.2■□□□□ 0.18
UPF1-209ENST00000600310 ACSM3Q53FZ2 586 aa16.2■□□□□ 0.18
UPF1-209ENST00000600310 TEX36Q5VZQ5 186 aa16.2■□□□□ 0.18
UPF1-209ENST00000600310 SFRP4Q6FHJ7 346 aaPredicted RBP16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms