RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ADAM20O43506 726 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 TFF1P04155 84 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 PITPNBP48739 271 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 GNB2P62879 340 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 ST3GAL4Q11206 333 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 DCAF12L2Q5VW00 463 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 C1orf229Q6ZS94 237 aaPredicted RBP12.68□□□□□ -0.38
LIG1-219ENST00000600055 AHSA2Q719I0 299 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 EGFL6Q8IUX8 553 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 ZNF676Q8N7Q3 588 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 CCDC54Q8NEL0 328 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 OR5T2Q8NGG2 359 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 OR10Z1Q8NGY1 313 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 AQP3Q92482 292 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 FGGYQ96C11 551 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 PDCD1LG2Q9BQ51 273 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 TMPRSS13Q9BYE2 586 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 SNTG1Q9NSN8 517 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 PLCXD1Q9NUJ7 323 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 PSORS1C1Q9UIG5 152 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 LRCH1Q9Y2L9 728 aa12.68□□□□□ -0.38
LIG1-219ENST00000600055 CAB39Q9Y376 341 aaPredicted RBP12.68□□□□□ -0.38
LIG1-219ENST00000600055 EXOSC1Q9Y3B2 195 aaKnown RBP12.68□□□□□ -0.38
LIG1-219ENST00000600055 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.67□□□□□ -0.38
LIG1-219ENST00000600055 A0A0G2JMP0 313 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 A0A0X1KG70 313 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 A0A1B0GW55 424 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 FAM230AA0A1W2PPH8 454 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 EFCAB10A6NFE3 127 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 SYNGR1O43759 233 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 FCN3O75636 299 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 ZFPL1O95159 310 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 DUX4L2P0CJ85 424 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 DUX4L3P0CJ86 424 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 DUX4L4P0CJ87 422 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 DUX4L5P0CJ88 424 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 DUX4L6P0CJ89 424 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 DUX4L7P0CJ90 424 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 PIPP12273 146 aaPredicted RBP12.67□□□□□ -0.38
LIG1-219ENST00000600055 MUC1P15941 1255 aaPredicted RBP12.67□□□□□ -0.38
LIG1-219ENST00000600055 ZNF12P17014 697 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 MYL12AP19105 171 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 HNF1AP20823 631 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 PCMT1P22061 227 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 HAAOP46952 286 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 TGM4P49221 684 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 KCNJ8Q15842 424 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 MICBQ29980 383 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 WDR25Q64LD2 544 aaPredicted RBP12.67□□□□□ -0.38
LIG1-219ENST00000600055 DUX4L9Q6RFH8 374 aaPredicted RBP12.67□□□□□ -0.38
LIG1-219ENST00000600055 IZUMO2Q6UXV1 221 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 TMPRSS11AQ6ZMR5 421 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 NLRC3Q7RTR2 1065 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 ANGPTL5Q86XS5 388 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 OR4M2Q8NGB6 313 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 OR13C3Q8NGS6 347 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 GATAD2BQ8WXI9 593 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 ZNF488Q96MN9 340 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 CCL13Q99616 98 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 CHST5Q9GZS9 411 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 Q9H521 79 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 TRIM36Q9NQ86 728 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 CNOT2Q9NZN8 540 aaKnown RBP12.67□□□□□ -0.38
LIG1-219ENST00000600055 DUX4Q9UBX2 424 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 HHLA2Q9UM44 414 aa12.67□□□□□ -0.38
LIG1-219ENST00000600055 POLR3KQ9Y2Y1 108 aaPredicted RBP12.67□□□□□ -0.38
LIG1-219ENST00000600055 SIRT4Q9Y6E7 314 aaPredicted RBP12.67□□□□□ -0.38
LIG1-219ENST00000600055 IGKV1-27A0A075B6S5 117 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 LOC105371242A0A075B767 164 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 IGKV1-9A0A0C4DH69 117 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 TRBV2A0A0J9YWF9 115 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 LALBAP00709 142 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 FAM157CP0CG43 387 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 ZNF20P17024 532 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 SRD5A1P18405 259 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 AMY2BP19961 511 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 CPT2P23786 658 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 C21orf33P30042 268 aaPredicted RBP12.66□□□□□ -0.38
LIG1-219ENST00000600055 PAX2Q02962 417 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 MRPL28Q13084 256 aaKnown RBP12.66□□□□□ -0.38
LIG1-219ENST00000600055 C6orf141Q5SZD1 244 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 ZNF573Q86YE8 665 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 CALHM1Q8IU99 346 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 BATF2Q8N1L9 274 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 FGFRL1Q8N441 504 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 OR5AK2Q8NH90 309 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 ZNF671Q8TAW3 534 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 C10orf35Q96D05 121 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 TECTBQ96PL2 329 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 SMURF1Q9HCE7 757 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 FKBP14Q9NWM8 211 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 DNAJB11Q9UBS4 358 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 CLN8Q9UBY8 286 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 OR5V1Q9UGF6 321 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 SLC7A11Q9UPY5 501 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 ARHGAP32A7KAX9 2087 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 SVEP1Q4LDE5 3571 aa12.66□□□□□ -0.38
LIG1-219ENST00000600055 PPIAL4CA0A0B4J2A2 164 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 TMEM212A6NML5 194 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 J3QT63 122 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms