RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 MRPL48Q96GC5 212 aaKnown RBP16.27■□□□□ 0.2
SHKBP1-221ENST00000599833 WDR13Q9H1Z4 485 aa16.27■□□□□ 0.2
SHKBP1-221ENST00000599833 VCX3BQ9H321 246 aa16.27■□□□□ 0.2
SHKBP1-221ENST00000599833 DNHD1Q96M86 4753 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 TRAPPC2LH3BP13 241 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 OGG1O15527 345 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 AVPP01185 164 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 IRF2P14316 349 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 MPZP25189 248 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 GBX2P52951 348 aaPredicted RBP16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 SLC35A2P78381 396 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 RNLSQ5VYX0 342 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 C1orf229Q6ZS94 237 aaPredicted RBP16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 RNF144BQ7Z419 303 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 CALHM1Q8IU99 346 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 DEFB108BQ8NET1 73 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 OR51F2Q8NH61 342 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 GATAD2BQ8WXI9 593 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 MYCBPQ99417 103 aaPredicted RBP16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 HIF1ANQ9NWT6 349 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 BABAM2Q9NXR7 383 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 ERVK-18Q9QC07 812 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 KCNS2Q9ULS6 477 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 HHLA2Q9UM44 414 aa16.26■□□□□ 0.19
SHKBP1-221ENST00000599833 IGHV3OR15-7A0A075B7D8 119 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 A0A1B0GW55 424 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 hCG_1807616A0A1W2PRN6 198 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 TMEM212A6NML5 194 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 CDK1P06493 297 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 DUX4L2P0CJ85 424 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 DUX4L3P0CJ86 424 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 DUX4L4P0CJ87 422 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 DUX4L5P0CJ88 424 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 DUX4L6P0CJ89 424 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 DUX4L7P0CJ90 424 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 ZNF12P17014 697 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 VHLP40337 213 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 LCN2P80188 198 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 IRF3Q14653 427 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 CR1LQ2VPA4 569 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 CCDC58Q4VC31 144 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 STUMQ69YW2 141 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 DMKNQ6E0U4 476 aaPredicted RBP16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 RPL22L1Q6P5R6 122 aaKnown RBP16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 DUX4L9Q6RFH8 374 aaPredicted RBP16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 UTS2BQ765I0 119 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 HAVCR2Q8TDQ0 301 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 PGLYRP3Q96LB9 341 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 HIST1H2AAQ96QV6 131 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 DUSP21Q9H596 190 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 MMP26Q9NRE1 261 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 DUX4Q9UBX2 424 aa16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 FBN1P35555 2871 aaKnown RBP16.25■□□□□ 0.19
SHKBP1-221ENST00000599833 TRAV20A0A0B4J274 112 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 AKR7A2O43488 359 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 SYNGR1O43759 233 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 CCDC159P0C7I6 412 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 CPT2P23786 658 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 HSPA13P48723 471 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 FAM120AOSQ5T036 256 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 HAGHLQ6PII5 290 aaPredicted RBP16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 TMPRSS11AQ6ZMR5 421 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 IL17RELQ6ZVW7 336 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 KCTD8Q6ZWB6 473 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 GLCCI1Q86VQ1 547 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 NANOGP1Q8N7R0 232 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 BOLLQ8N9W6 283 aaKnown RBP16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 OR5AK2Q8NH90 309 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 PP6455Q8WZ26 134 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 FGGYQ96C11 551 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 TMPRSS13Q9BYE2 586 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 SMURF1Q9HCE7 757 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 KAAG1Q9UBP8 84 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 MIOXQ9UGB7 285 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 LRCH1Q9Y2L9 728 aa16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 LSM2Q9Y333 95 aaKnown RBP16.24■□□□□ 0.19
SHKBP1-221ENST00000599833 PPIAL4CA0A0B4J2A2 164 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 TRBV2A0A0J9YWF9 115 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 J3QT63 122 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 PHF1O43189 567 aaPredicted RBP16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 NOS1APO75052 506 aaPredicted RBP16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 GYPAP02724 150 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 PGA5P0DJD9 388 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 RPS2P15880 293 aaKnown RBP16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 MYL12AP19105 171 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 RIPPLY3P57055 190 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 RPS11P62280 158 aaKnown RBP eCLIP16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 ZNF529Q6P280 563 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 FGFRL1Q8N441 504 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 ZNF676Q8N7Q3 588 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 SMIM19Q96E16 107 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 NEIL1Q96FI4 390 aaPredicted RBP16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 CDCA4Q9BXL8 241 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 PLEKHA1Q9HB21 404 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 HES4Q9HCC6 221 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 OPN4Q9UHM6 478 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 ZNF222Q9UK12 451 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 RAB26Q9ULW5 256 aa16.23■□□□□ 0.19
SHKBP1-221ENST00000599833 TRAV38-1A0A0B4J264 116 aa16.22■□□□□ 0.19
SHKBP1-221ENST00000599833 FOXH1O75593 365 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms