RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 DUX4L7P0CJ90 424 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 SLC2A5P22732 501 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 SAA4P35542 130 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 ACTR3P61158 418 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 SRSF4Q08170 494 aaKnown RBP11.14□□□□□ -0.63
TRIM28-211ENST00000597968 DUX4L9Q6RFH8 374 aaPredicted RBP11.14□□□□□ -0.63
TRIM28-211ENST00000597968 TRPM8Q7Z2W7 1104 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 CALHM1Q8IU99 346 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 CPOQ8IVL8 374 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 PDZD9Q8IXQ8 264 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 ZNF679Q8IYX0 411 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 OR5T2Q8NGG2 359 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 OR5K1Q8NHB7 308 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 LYZL4Q96KX0 146 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 PRRG3Q9BZD7 231 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 MOB1AQ9H8S9 216 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 SLC25A19Q9HC21 320 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 FAM53CQ9NYF3 392 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 DUX4Q9UBX2 424 aa11.14□□□□□ -0.63
TRIM28-211ENST00000597968 ANKRD61A6NGH8 418 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 GYG2O15488 501 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 PSG2P11465 335 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 NDUFB7P17568 137 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 KIR2DS4P43632 304 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 GPM6AP51674 278 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 KRTAP10-3P60369 221 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 SMIM21Q3B7S5 101 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 ZNF829Q3KNS6 432 aaPredicted RBP11.13□□□□□ -0.63
TRIM28-211ENST00000597968 THAP5Q7Z6K1 395 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 SPATA24Q86W54 205 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 ZNF573Q86YE8 665 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 FGFRL1Q8N441 504 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 ZNF561Q8N587 486 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 AQP3Q92482 292 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 SEH1LQ96EE3 360 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 DUS3LQ96G46 650 aaKnown RBP11.13□□□□□ -0.63
TRIM28-211ENST00000597968 TEAD3Q99594 435 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 CDCA4Q9BXL8 241 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 PPP1R3EQ9H7J1 279 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 HEXA-AS1Q9H8Q6 139 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 SNTG1Q9NSN8 517 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 FAM206AQ9NX38 181 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 NUFIP1Q9UHK0 495 aaKnown RBP11.13□□□□□ -0.63
TRIM28-211ENST00000597968 ENPP5Q9UJA9 477 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 ZNF222Q9UK12 451 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.13□□□□□ -0.63
TRIM28-211ENST00000597968 POLDIP2Q9Y2S7 368 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 MAB21L2Q9Y586 359 aa11.13□□□□□ -0.63
TRIM28-211ENST00000597968 IGKV1D-17A0A075B6S4 117 aa11.12□□□□□ -0.63
TRIM28-211ENST00000597968 ZNF732B4DXR9 585 aa11.12□□□□□ -0.63
TRIM28-211ENST00000597968 H0YAE9 185 aa11.12□□□□□ -0.63
TRIM28-211ENST00000597968 SLC1A7O00341 560 aa11.12□□□□□ -0.63
TRIM28-211ENST00000597968 RPS7P62081 194 aaKnown RBP11.12□□□□□ -0.63
TRIM28-211ENST00000597968 ELF3P78545 371 aaPredicted RBP11.12□□□□□ -0.63
TRIM28-211ENST00000597968 TMEM236Q5W0B7 351 aa11.12□□□□□ -0.63
TRIM28-211ENST00000597968 POC1AQ8NBT0 407 aa11.12□□□□□ -0.63
TRIM28-211ENST00000597968 OR51G2Q8NGK0 314 aa11.12□□□□□ -0.63
TRIM28-211ENST00000597968 BCAS4Q8TDM0 211 aa11.12□□□□□ -0.63
TRIM28-211ENST00000597968 SLC7A6OSQ96CW6 309 aaPredicted RBP11.12□□□□□ -0.63
TRIM28-211ENST00000597968 FGF23Q9GZV9 251 aaPredicted RBP11.12□□□□□ -0.63
TRIM28-211ENST00000597968 PBOV1Q9GZY1 135 aa11.12□□□□□ -0.63
TRIM28-211ENST00000597968 DNAJB9Q9UBS3 223 aa11.12□□□□□ -0.63
TRIM28-211ENST00000597968 DLGAP1O14490 977 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 RHBDL1O75783 438 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 DHRS3O75911 302 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 SELLP14151 372 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 GABRA5P31644 462 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 GABRA2P47869 451 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 RIDAP52758 137 aaKnown RBP11.11□□□□□ -0.63
TRIM28-211ENST00000597968 HCCSP53701 268 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 ESRRGP62508 458 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 CBX1P83916 185 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 APOFQ13790 326 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 FLOT2Q14254 428 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 HERPUD1Q15011 391 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 SNAPC1Q16533 368 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 LRRC75BQ2VPJ9 315 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 DNAL1Q4LDG9 190 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 SLC35E4Q6ICL7 350 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 Q6ZSR3 168 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 Q6ZTK2 550 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 ZNRF1Q8ND25 227 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 BBS1Q8NFJ9 593 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 OR8B4Q96RC9 309 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 SSX3Q99909 188 aa11.11□□□□□ -0.63
TRIM28-211ENST00000597968 J3QT63 122 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 FKBP6O75344 327 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 NRASP01111 189 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 RBP4P02753 201 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 CSF1P09603 554 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 PGA5P0DJD9 388 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 CLVS2Q5SYC1 327 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 ZNF684Q5T5D7 378 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 TMEM42Q69YG0 159 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 HAGHLQ6PII5 290 aaPredicted RBP11.1□□□□□ -0.63
TRIM28-211ENST00000597968 ACP7Q6ZNF0 438 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 CCDC54Q8NEL0 328 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 TMEM185AQ8NFB2 350 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 OR4C13Q8NGP0 309 aa11.1□□□□□ -0.63
TRIM28-211ENST00000597968 SEMA6AQ9H2E6 1030 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms