RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 ZNF593O00488 134 aaPredicted RBP8.1□□□□□ -1.11
TRIM28-210ENST00000597618 RAMP3O60896 148 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 MTRF1O75570 445 aaKnown RBP8.1□□□□□ -1.11
TRIM28-210ENST00000597618 RBP4P02753 201 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 FMO3P31513 532 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 ZNF121P58317 390 aaPredicted RBP8.1□□□□□ -1.11
TRIM28-210ENST00000597618 LIPEQ05469 1076 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 SLC34A1Q06495 639 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 EIF2B1Q14232 305 aaKnown RBP8.1□□□□□ -1.11
TRIM28-210ENST00000597618 ZNF273Q14593 569 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 KRT72Q14CN4 511 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 SMIM21Q3B7S5 101 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 DMRTC1Q5HYR2 192 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 TEX30Q5JUR7 227 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 NKAPLQ5M9Q1 402 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 ETV3LQ6ZN32 361 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 TIGD4Q8IY51 512 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 Q8NFD4 153 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 OR11H6Q8NGC7 330 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 OR4M1Q8NGD0 313 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 OR51L1Q8NGJ5 315 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 OR2T27Q8NH04 317 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 CAPSLQ8WWF8 208 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 HIST1H2AAQ96QV6 131 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 ZNF649Q9BS31 505 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 FUZQ9BT04 418 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 FGF23Q9GZV9 251 aaPredicted RBP8.1□□□□□ -1.11
TRIM28-210ENST00000597618 CMTM6Q9NX76 183 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 RASL12Q9NYN1 266 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 DNAJC27Q9NZQ0 273 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 LYSTQ99698 3801 aa8.1□□□□□ -1.11
TRIM28-210ENST00000597618 LCE6AA0A183 80 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 RFPL4AA6NLU0 287 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 C17orf98A8MV24 154 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 FAM90A22PA8MWA6 464 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 RFPL4AL1F8VTS6 287 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 ACKR3P25106 362 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 IFNGR2P38484 337 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 GPM6AP51674 278 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 DLX6P56179 175 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 SMIM11AP58511 58 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 GNG3P63215 75 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 DYNC1I2Q13409 638 aaKnown RBP8.09□□□□□ -1.11
TRIM28-210ENST00000597618 LDLRAD2Q5SZI1 272 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 MINOS1Q5TGZ0 78 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 ZNF770Q6IQ21 691 aaPredicted RBP8.09□□□□□ -1.11
TRIM28-210ENST00000597618 LCN8Q6JVE9 175 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 CD177Q8N6Q3 437 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 OR52L1Q8NGH7 329 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 ZNF671Q8TAW3 534 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 ZNRF4Q8WWF5 429 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 PIGCQ92535 297 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 TFAP2CQ92754 450 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 FAM162AQ96A26 154 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 PGAM5Q96HS1 289 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 OR51I2Q9H344 312 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 LIN7BQ9HAP6 207 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 GMPR2Q9P2T1 348 aaKnown RBP8.09□□□□□ -1.11
TRIM28-210ENST00000597618 LSM4Q9Y4Z0 139 aaKnown RBP8.09□□□□□ -1.11
TRIM28-210ENST00000597618 HILPDAQ9Y5L2 63 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 MINOS1-NBL1R4GNA1 71 aa8.09□□□□□ -1.11
TRIM28-210ENST00000597618 LPLP06858 475 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 PGA5P0DJD9 388 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 SLC6A1P30531 599 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 THBS3P49746 956 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 BLVRAP53004 296 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 KLF10Q13118 480 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 IL18R1Q13478 541 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 RPL13AP3Q6NVV1 102 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 ACP7Q6ZNF0 438 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 SLC15A3Q8IY34 581 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 ZNF511Q8NB15 262 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 OR6K6Q8NGW6 343 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 NDNFQ8TB73 568 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 RNF133Q8WVZ7 376 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 AQP3Q92482 292 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 C7orf34Q96L11 122 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 BRD7Q9NPI1 651 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 ZNF319Q9P2F9 582 aa8.08□□□□□ -1.12
TRIM28-210ENST00000597618 OR5B21A6NL26 309 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 ZNF732B4DXR9 585 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 EDF1O60869 148 aaKnown RBP8.07□□□□□ -1.12
TRIM28-210ENST00000597618 DNAJC8O75937 253 aaPredicted RBP8.07□□□□□ -1.12
TRIM28-210ENST00000597618 DIRAS1O95057 198 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 GADD45GO95257 159 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 TK1P04183 234 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 ZNF728P0DKX0 622 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 IGHV1-8P0DP01 117 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 PIPP12273 146 aaPredicted RBP8.07□□□□□ -1.12
TRIM28-210ENST00000597618 LYL1P12980 280 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 JUNBP17275 347 aaPredicted RBP8.07□□□□□ -1.12
TRIM28-210ENST00000597618 PRDX2P32119 198 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 OPRL1P41146 370 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 GSSP48637 474 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 CEBPDP49716 269 aaPredicted RBP8.07□□□□□ -1.12
TRIM28-210ENST00000597618 GP2P55259 537 aaKnown RBP8.07□□□□□ -1.12
TRIM28-210ENST00000597618 RPL23AP62750 156 aaKnown RBP8.07□□□□□ -1.12
TRIM28-210ENST00000597618 TSPAN31Q12999 210 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 CEACAM21Q3KPI0 293 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 ABCA11PQ4W5N1 156 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms