RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-208ENST00000595758 HOXA4Q00056 320 aaPredicted RBP12.04□□□□□ -0.48
LIG1-208ENST00000595758 CNN3Q15417 329 aaKnown RBP12.04□□□□□ -0.48
LIG1-208ENST00000595758 SPHARQ15513 63 aa12.04□□□□□ -0.48
LIG1-208ENST00000595758 HAGHLQ6PII5 290 aaPredicted RBP12.04□□□□□ -0.48
LIG1-208ENST00000595758 Q71RC1 249 aaPredicted RBP12.04□□□□□ -0.48
LIG1-208ENST00000595758 UTS2BQ765I0 119 aa12.04□□□□□ -0.48
LIG1-208ENST00000595758 PRSS48Q7RTY5 328 aa12.04□□□□□ -0.48
LIG1-208ENST00000595758 ZNF573Q86YE8 665 aa12.04□□□□□ -0.48
LIG1-208ENST00000595758 GCSAMQ8N6F7 178 aa12.04□□□□□ -0.48
LIG1-208ENST00000595758 LINC01356Q8N9X3 169 aa12.04□□□□□ -0.48
LIG1-208ENST00000595758 C19orf18Q8NEA5 215 aa12.04□□□□□ -0.48
LIG1-208ENST00000595758 OR10Z1Q8NGY1 313 aa12.04□□□□□ -0.48
LIG1-208ENST00000595758 TRMT10AQ8TBZ6 339 aaKnown RBP12.04□□□□□ -0.48
LIG1-208ENST00000595758 NPRL2Q8WTW4 380 aa12.04□□□□□ -0.48
LIG1-208ENST00000595758 RGP1Q92546 391 aaPredicted RBP12.04□□□□□ -0.48
LIG1-208ENST00000595758 MSI2Q96DH6 328 aaKnown RBP12.04□□□□□ -0.48
LIG1-208ENST00000595758 C1orf159Q96HA4 380 aa12.04□□□□□ -0.48
LIG1-208ENST00000595758 YLPM1P49750 1951 aaKnown RBP12.03□□□□□ -0.48
LIG1-208ENST00000595758 TRAV38-1A0A0B4J264 116 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 PNMA8CA0A1B0GUJ8 204 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 FAM157AC9JC47 383 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 C3orf80F5H4A9 247 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 EGR1P18146 543 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 ATF1P18846 271 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 CELP19835 753 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 PRKACBP22694 351 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 HAAOP46952 286 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 SOX2P48431 317 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 BDH1Q02338 343 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 DOC2BQ14184 412 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 KCNJ8Q15842 424 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 ZNF404Q494X3 552 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 SFRP4Q6FHJ7 346 aaPredicted RBP12.03□□□□□ -0.48
LIG1-208ENST00000595758 SERPINA12Q8IW75 414 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 ZNF671Q8TAW3 534 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 AQP3Q92482 292 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 OR5M11Q96RB7 305 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 TMEM246Q9BRR3 403 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 YTHDF1Q9BYJ9 559 aaKnown RBP12.03□□□□□ -0.48
LIG1-208ENST00000595758 ZCCHC4Q9H5U6 513 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 PATZ1Q9HBE1 687 aaKnown RBP12.03□□□□□ -0.48
LIG1-208ENST00000595758 YAE1D1Q9NRH1 226 aa12.03□□□□□ -0.48
LIG1-208ENST00000595758 LSM2Q9Y333 95 aaKnown RBP12.03□□□□□ -0.48
LIG1-208ENST00000595758 IGKV1-9A0A0C4DH69 117 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 OOEPA6NGQ2 149 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 CEACAM18A8MTB9 384 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 SRRM5B3KS81 715 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 B4DSR2 109 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 J3QT63 122 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 AKR7A2O43488 359 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 PLPP2O43688 288 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 RHBDL1O75783 438 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 TGFAP01135 160 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 CD2P06729 351 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 OCM2P0CE71 109 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 OCMP0CE72 109 aaPredicted RBP12.02□□□□□ -0.49
LIG1-208ENST00000595758 ZNF16P17020 682 aaPredicted RBP12.02□□□□□ -0.49
LIG1-208ENST00000595758 CPT2P23786 658 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 ACSM1Q08AH1 577 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 MED22Q15528 200 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 YIF1BQ5BJH7 314 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 ANGPTL5Q86XS5 388 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 PARP16Q8N5Y8 322 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 DNAAF1Q8NEP3 725 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 OR5D14Q8NGL3 314 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 OR13C9Q8NGT0 318 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 BORCS8Q96FH0 119 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 PGLYRP3Q96LB9 341 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 NEK6Q9HC98 313 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 MIOXQ9UGB7 285 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 HIVEP2P31629 2446 aa12.02□□□□□ -0.49
LIG1-208ENST00000595758 IGHV3OR15-7A0A075B7D8 119 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.01□□□□□ -0.49
LIG1-208ENST00000595758 NDUFA2O43678 99 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 CD1AP06126 327 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 WNT2P09544 360 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 MUC1P15941 1255 aaPredicted RBP12.01□□□□□ -0.49
LIG1-208ENST00000595758 AZGP1P25311 298 aaKnown RBP12.01□□□□□ -0.49
LIG1-208ENST00000595758 MAP2K4P45985 399 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 ATP1B3P54709 279 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 GABARAPL2P60520 117 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 GMFBP60983 142 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 MICBQ29980 383 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 TEX36Q5VZQ5 186 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 DCDC5Q6ZRR9 648 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 FAM90A1Q86YD7 464 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 OR13C5Q8NGS8 318 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 SPSB1Q96BD6 273 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 OPALINQ96PE5 141 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 LPAR2Q9HBW0 351 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 POLDIP2Q9Y2S7 368 aa12.01□□□□□ -0.49
LIG1-208ENST00000595758 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.01□□□□□ -0.499e-6■■□□□ 12.6
LIG1-208ENST00000595758 IGKV1-27A0A075B6S5 117 aa12□□□□□ -0.49
LIG1-208ENST00000595758 TRBV5-5A0A0J9YX44 114 aa12□□□□□ -0.49
LIG1-208ENST00000595758 A8MV72 311 aaPredicted RBP12□□□□□ -0.49
LIG1-208ENST00000595758 F5H0A9 414 aaPredicted RBP12□□□□□ -0.49
LIG1-208ENST00000595758 SYNGR1O43759 233 aa12□□□□□ -0.49
LIG1-208ENST00000595758 MRPS14O60783 128 aaKnown RBP12□□□□□ -0.49
LIG1-208ENST00000595758 ALX3O95076 343 aa12□□□□□ -0.49
LIG1-208ENST00000595758 GYPAP02724 150 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms