RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 TEX29Q8N6K0 151 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 OR4M2Q8NGB6 313 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 C12orf43Q96C57 262 aaKnown RBP12.56□□□□□ -0.4
UPF1-202ENST00000594243 SSBP3Q9BWW4 388 aaPredicted RBP12.56□□□□□ -0.4
UPF1-202ENST00000594243 BABAM2Q9NXR7 383 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 ERVK-18Q9QC07 812 aa12.56□□□□□ -0.4
UPF1-202ENST00000594243 A8MXK9 166 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 J3QLI3 93 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 TNFRSF13BO14836 293 aaPredicted RBP12.55□□□□□ -0.4
UPF1-202ENST00000594243 ZNF20P17024 532 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 EGR1P18146 543 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 ZFP36P26651 326 aaKnown RBP12.55□□□□□ -0.4
UPF1-202ENST00000594243 HAAOP46952 286 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 HSPA13P48723 471 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 PITPNBP48739 271 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 FUT6P51993 359 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 SEC61A1P61619 476 aaKnown RBP12.55□□□□□ -0.4
UPF1-202ENST00000594243 HOXA4Q00056 320 aaPredicted RBP12.55□□□□□ -0.4
UPF1-202ENST00000594243 CNN3Q15417 329 aaKnown RBP12.55□□□□□ -0.4
UPF1-202ENST00000594243 LAIR2Q6ISS4 152 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 RPL22L1Q6P5R6 122 aaKnown RBP12.55□□□□□ -0.4
UPF1-202ENST00000594243 HAGHLQ6PII5 290 aaPredicted RBP12.55□□□□□ -0.4
UPF1-202ENST00000594243 LYPD2Q6UXB3 125 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 STX19Q8N4C7 294 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 OR5AK2Q8NH90 309 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 AQP3Q92482 292 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 FGGYQ96C11 551 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 CHST5Q9GZS9 411 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 CLN8Q9UBY8 286 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 OR5V1Q9UGF6 321 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 PSORS1C1Q9UIG5 152 aa12.55□□□□□ -0.4
UPF1-202ENST00000594243 PQLC2LA1A4F0 135 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 E9PI62 339 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 AKR7A2O43488 359 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 ADAM20O43506 726 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 XPNPEP2O43895 674 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 RHBDL1O75783 438 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 ZFPL1O95159 310 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 GYPAP02724 150 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 FAM157CP0CG43 387 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 SRD5A1P18405 259 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 GLRA1P23415 457 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 UBE2V2Q15819 145 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 C6orf141Q5SZD1 244 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 OR2G6Q5TZ20 316 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 AHSA2Q719I0 299 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 FAM90A1Q86YD7 464 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 OR13C3Q8NGS6 347 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 OR52N1Q8NH53 320 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 SCN3BQ9NY72 215 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 RASL12Q9NYN1 266 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 KAAG1Q9UBP8 84 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 DNAJB11Q9UBS4 358 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 CLEC2DQ9UHP7 191 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 POLDIP2Q9Y2S7 368 aa12.54□□□□□ -0.4
UPF1-202ENST00000594243 ABCA2Q9BZC7 2435 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 DNHD1Q96M86 4753 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 IGHV3OR15-7A0A075B7D8 119 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 FAM230AA0A1W2PPH8 454 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 KIAA1324LA8MWY0 1029 aaPredicted RBP12.53□□□□□ -0.4
UPF1-202ENST00000594243 TRAPPC2LH3BP13 241 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 TMPRSS2O15393 492 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 PHF1O43189 567 aaPredicted RBP12.53□□□□□ -0.4
UPF1-202ENST00000594243 IFNA2P01563 188 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 OCM2P0CE71 109 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 OCMP0CE72 109 aaPredicted RBP12.53□□□□□ -0.4
UPF1-202ENST00000594243 MYF6P23409 242 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 SRP14P37108 136 aaKnown RBP12.53□□□□□ -0.4
UPF1-202ENST00000594243 GTF2A1P52655 376 aaPredicted RBP12.53□□□□□ -0.4
UPF1-202ENST00000594243 CD276Q5ZPR3 534 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 WDR25Q64LD2 544 aaPredicted RBP12.53□□□□□ -0.4
UPF1-202ENST00000594243 IZUMO2Q6UXV1 221 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 ZNF841Q6ZN19 808 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 IL17RELQ6ZVW7 336 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 UTS2BQ765I0 119 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 SLC36A1Q7Z2H8 476 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 GATAD2BQ8WXI9 593 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 TMIGD2Q96BF3 282 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 ADAT3Q96EY9 351 aaPredicted RBP12.53□□□□□ -0.4
UPF1-202ENST00000594243 BORCS8Q96FH0 119 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 PDCD1LG2Q9BQ51 273 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 ANKRD60Q9BZ19 345 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 DNTTIP1Q9H147 329 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 C7orf69Q9H7B7 122 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 NEK6Q9HC98 313 aa12.53□□□□□ -0.4
UPF1-202ENST00000594243 FN1P02751 2386 aaKnown RBP12.53□□□□□ -0.4
UPF1-202ENST00000594243 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.52□□□□□ -0.41
UPF1-202ENST00000594243 J3QT63 122 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 NOS1APO75052 506 aaPredicted RBP12.52□□□□□ -0.41
UPF1-202ENST00000594243 ACAA1P09110 424 aaPredicted RBP12.52□□□□□ -0.41
UPF1-202ENST00000594243 ATF1P18846 271 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 PRKACBP22694 351 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 VHLP40337 213 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 RBP2P50120 134 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 ATP1B3P54709 279 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 GMFBP60983 142 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 C11orf91Q3C1V1 193 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 ATPAF1Q5TC12 328 aaPredicted RBP12.52□□□□□ -0.41
UPF1-202ENST00000594243 BTNL3Q6UXE8 466 aa12.52□□□□□ -0.41
UPF1-202ENST00000594243 SERPINA12Q8IW75 414 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms