RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 BRMS1LQ5PSV4 323 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 RBM48Q5RL73 367 aaKnown RBP3.41□□□□□ -1.86
NUP88-213ENST00000576862 LRRN1Q6UXK5 716 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 Q8N402 240 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 CDRT4Q8N9R6 151 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 OR10A7Q8NGE5 316 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 OR52N1Q8NH53 320 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 OR52E5Q8NH55 327 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 MCOLN3Q8TDD5 553 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 TCP10LQ8TDR4 215 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 CXorf40AQ8TE69 158 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 FGGYQ96C11 551 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 NIPSNAP1Q9BPW8 284 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 KLHDC3Q9BQ90 382 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 SNRNP25Q9BV90 132 aaKnown RBP3.41□□□□□ -1.86
NUP88-213ENST00000576862 CALN1Q9BXU9 219 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 ULBP1Q9BZM6 244 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 INPP5EQ9NRR6 644 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 MARCH5Q9NX47 278 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 CMTM6Q9NX76 183 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 MAT2BQ9NZL9 334 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 SCN10AQ9Y5Y9 1956 aa3.41□□□□□ -1.86
NUP88-213ENST00000576862 LOXHD1Q8IVV2 1947 aa3.4□□□□□ -1.86
NUP88-213ENST00000576862 HTTP42858 3142 aa3.4□□□□□ -1.86
NUP88-213ENST00000576862 PRSS37A4D1T9 235 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 A6NIZ1 184 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 H3BNH8 94 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 APOC4-APOC2K7ER74 178 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 M0QXV9 152 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 SLC31A1O15431 190 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 CST8O60676 142 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 SLC19A2O60779 497 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 TBL1XO60907 577 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 NOS1APO75052 506 aaPredicted RBP3.4□□□□□ -1.87
NUP88-213ENST00000576862 SC5DO75845 299 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 APOC2P02655 101 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 IFNW1P05000 195 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 RD3LP0DJH9 198 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 IMPDH1P20839 514 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 BCKDHBP21953 392 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 CALCRP30988 508 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 MAP3K8P41279 467 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 P2RY1P47900 373 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 GABRA4P48169 554 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 CYB561P49447 251 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 CCL23P55773 120 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 EWSR1Q01844 656 aaKnown RBP eCLIP3.4□□□□□ -1.87
NUP88-213ENST00000576862 KLRB1Q12918 225 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 BNIP2Q12982 314 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 SELENBP1Q13228 472 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 SMCO1Q147U7 214 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 PTGES3Q15185 160 aaKnown RBP3.4□□□□□ -1.87
NUP88-213ENST00000576862 ZNF77Q15935 545 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 SLC25A52Q3SY17 297 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 TMEM176BQ3YBM2 270 aaPredicted RBP3.4□□□□□ -1.87
NUP88-213ENST00000576862 IDNKQ5T6J7 187 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 DNM1P34Q6PK57 102 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 UQCC3Q6UW78 93 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 CERS6Q6ZMG9 384 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 ZNF621Q6ZSS3 439 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 SSX6Q7RTT6 188 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 OR2W3Q7Z3T1 314 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 SETD3Q86TU7 594 aaPredicted RBP3.4□□□□□ -1.87
NUP88-213ENST00000576862 PGAM4Q8N0Y7 254 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 DEFB106AQ8N104 65 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 STPG2Q8N412 459 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 RIBC1Q8N443 379 aaPredicted RBP3.4□□□□□ -1.87
NUP88-213ENST00000576862 TMEM251Q8N6I4 163 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 OR5AK3PQ8NH89 298 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 OR10J5Q8NHC4 309 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 MAGEE2Q8TD90 523 aaPredicted RBP3.4□□□□□ -1.87
NUP88-213ENST00000576862 NEK7Q8TDX7 302 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 TRUB1Q8WWH5 349 aaKnown RBP3.4□□□□□ -1.87
NUP88-213ENST00000576862 MYDGFQ969H8 173 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 SMARCD1Q96GM5 515 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 FMO2Q99518 471 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 MICU1Q9BPX6 476 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 ZNF670Q9BS34 389 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 TIMM29Q9BSF4 260 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 FEM1AQ9BSK4 669 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 NIPAL2Q9H841 368 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 NMRAL1Q9HBL8 299 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 MYOZ1Q9NP98 299 aaPredicted RBP3.4□□□□□ -1.87
NUP88-213ENST00000576862 ARMC1Q9NVT9 282 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 RHBDL2Q9NX52 303 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 OPN4Q9UHM6 478 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 ENOPH1Q9UHY7 261 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 RIMS3Q9UJD0 308 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 TBX21Q9UL17 535 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 V9GYY9 64 aa3.4□□□□□ -1.87
NUP88-213ENST00000576862 TRPM7Q96QT4 1865 aa3.39□□□□□ -1.87
NUP88-213ENST00000576862 LRP5LA4QPB2 252 aa3.39□□□□□ -1.87
NUP88-213ENST00000576862 OR2AT4A6NND4 320 aa3.39□□□□□ -1.87
NUP88-213ENST00000576862 SYCE1LA8MT33 242 aa3.39□□□□□ -1.87
NUP88-213ENST00000576862 PLPP3O14495 311 aa3.39□□□□□ -1.87
NUP88-213ENST00000576862 BET1O15155 118 aa3.39□□□□□ -1.87
NUP88-213ENST00000576862 SGCEO43556 437 aa3.39□□□□□ -1.87
NUP88-213ENST00000576862 MMP23AO75900 390 aa3.39□□□□□ -1.87
NUP88-213ENST00000576862 GLSO94925 669 aaPredicted RBP3.39□□□□□ -1.87
NUP88-213ENST00000576862 TSPAN13O95857 204 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms