RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TMEM230Q96A57 120 aa8.8□□□□□ -1
VPS53-220ENST00000576149 ST6GALNAC5Q9BVH7 336 aa8.8□□□□□ -1
VPS53-220ENST00000576149 C1QTNF6Q9BXI9 259 aa8.8□□□□□ -1
VPS53-220ENST00000576149 DEPPQ9NTK1 212 aa8.8□□□□□ -1
VPS53-220ENST00000576149 PMS2P1A4D2B8 440 aa8.8□□□□□ -1
VPS53-220ENST00000576149 B9A039 149 aa8.8□□□□□ -1
VPS53-220ENST00000576149 BCL2L11O43521 198 aa8.8□□□□□ -1
VPS53-220ENST00000576149 CA11O75493 328 aa8.8□□□□□ -1
VPS53-220ENST00000576149 ZNF883P0CG24 379 aa8.8□□□□□ -1
VPS53-220ENST00000576149 ACKR3P25106 362 aa8.8□□□□□ -1
VPS53-220ENST00000576149 SNU13P55769 128 aaKnown RBP8.8□□□□□ -1
VPS53-220ENST00000576149 CLDN15P56746 228 aa8.8□□□□□ -1
VPS53-220ENST00000576149 TAS2R46P59540 309 aa8.8□□□□□ -1
VPS53-220ENST00000576149 HGFACQ04756 655 aa8.8□□□□□ -1
VPS53-220ENST00000576149 SCRN3Q0VDG4 424 aa8.8□□□□□ -1
VPS53-220ENST00000576149 ARL6IP1Q15041 203 aa8.8□□□□□ -1
VPS53-220ENST00000576149 KRTAP27-1Q3LI81 207 aa8.8□□□□□ -1
VPS53-220ENST00000576149 AADACL3Q5VUY0 350 aa8.8□□□□□ -1
VPS53-220ENST00000576149 TCEAL6Q6IPX3 200 aa8.8□□□□□ -1
VPS53-220ENST00000576149 TMEM17Q86X19 198 aa8.8□□□□□ -1
VPS53-220ENST00000576149 PDZD9Q8IXQ8 264 aa8.8□□□□□ -1
VPS53-220ENST00000576149 OR13G1Q8NGZ3 307 aa8.8□□□□□ -1
VPS53-220ENST00000576149 OR2AE1Q8NHA4 323 aa8.8□□□□□ -1
VPS53-220ENST00000576149 THAP6Q8TBB0 222 aa8.8□□□□□ -1
VPS53-220ENST00000576149 PSMF1Q92530 271 aa8.8□□□□□ -1
VPS53-220ENST00000576149 TCEAL3Q969E4 200 aa8.8□□□□□ -1
VPS53-220ENST00000576149 SPSB1Q96BD6 273 aa8.8□□□□□ -1
VPS53-220ENST00000576149 CCDC120Q96HB5 630 aa8.8□□□□□ -1
VPS53-220ENST00000576149 REEP6Q96HR9 211 aa8.8□□□□□ -1
VPS53-220ENST00000576149 SCGB3A2Q96PL1 93 aa8.8□□□□□ -1
VPS53-220ENST00000576149 VRK1Q99986 396 aaPredicted RBP8.8□□□□□ -1
VPS53-220ENST00000576149 WDR13Q9H1Z4 485 aa8.8□□□□□ -1
VPS53-220ENST00000576149 GPR173Q9NS66 373 aa8.8□□□□□ -1
VPS53-220ENST00000576149 P4HTMQ9NXG6 502 aa8.8□□□□□ -1
VPS53-220ENST00000576149 KIAA1549Q9HCM3 1950 aa8.79□□□□□ -1
VPS53-220ENST00000576149 VPS13AQ96RL7 3174 aa8.79□□□□□ -1
VPS53-220ENST00000576149 KANTRA0A1W2PQU2 76 aa8.79□□□□□ -1
VPS53-220ENST00000576149 PINLYPA6NC86 204 aa8.79□□□□□ -1
VPS53-220ENST00000576149 OR6C6A6NF89 314 aa8.79□□□□□ -1
VPS53-220ENST00000576149 EEF1E1-BLOC1S5C9J1V9 151 aa8.79□□□□□ -1
VPS53-220ENST00000576149 TRAPPC6AO75865 159 aa8.79□□□□□ -1
VPS53-220ENST00000576149 SCO1O75880 301 aa8.79□□□□□ -1
VPS53-220ENST00000576149 SFT2D2O95562 160 aa8.79□□□□□ -1
VPS53-220ENST00000576149 B4GALT1P15291 398 aa8.79□□□□□ -1
VPS53-220ENST00000576149 ZNF32P17041 273 aa8.79□□□□□ -1
VPS53-220ENST00000576149 PRKACBP22694 351 aa8.79□□□□□ -1
VPS53-220ENST00000576149 DLSTP36957 453 aa8.79□□□□□ -1
VPS53-220ENST00000576149 OR3A2P47893 321 aa8.79□□□□□ -1
VPS53-220ENST00000576149 MTCP1P56278 107 aa8.79□□□□□ -1
VPS53-220ENST00000576149 RIPPLY2Q5TAB7 128 aa8.79□□□□□ -1
VPS53-220ENST00000576149 RTL6Q6ICC9 239 aa8.79□□□□□ -1
VPS53-220ENST00000576149 RAB11FIP2Q7L804 512 aa8.79□□□□□ -1
VPS53-220ENST00000576149 SULF2Q8IWU5 870 aa8.79□□□□□ -1
VPS53-220ENST00000576149 DEFB123Q8N688 67 aa8.79□□□□□ -1
VPS53-220ENST00000576149 CSNK2A3Q8NEV1 391 aa8.79□□□□□ -1
VPS53-220ENST00000576149 ALKBH3Q96Q83 286 aaPredicted RBP8.79□□□□□ -1
VPS53-220ENST00000576149 TAAR9Q96RI9 348 aa8.79□□□□□ -1
VPS53-220ENST00000576149 RTBDNQ9BSG5 229 aaPredicted RBP8.79□□□□□ -1
VPS53-220ENST00000576149 SPRY4Q9C004 299 aa8.79□□□□□ -1
VPS53-220ENST00000576149 SLC25A32Q9H2D1 315 aa8.79□□□□□ -1
VPS53-220ENST00000576149 ELL3Q9HB65 397 aaPredicted RBP8.79□□□□□ -1
VPS53-220ENST00000576149 OSGIN2Q9Y236 505 aa8.79□□□□□ -1
VPS53-220ENST00000576149 A0A0B4J2A0 478 aa8.79□□□□□ -1
VPS53-220ENST00000576149 C5orf51A6NDU8 294 aa8.79□□□□□ -1
VPS53-220ENST00000576149 SDCBPO00560 298 aaPredicted RBP8.79□□□□□ -1
VPS53-220ENST00000576149 CRHP06850 196 aa8.79□□□□□ -1
VPS53-220ENST00000576149 ZP3P21754 424 aa8.79□□□□□ -1
VPS53-220ENST00000576149 SERPINF1P36955 418 aa8.79□□□□□ -1
VPS53-220ENST00000576149 RGS19P49795 217 aa8.79□□□□□ -1
VPS53-220ENST00000576149 FOXO1Q12778 655 aa8.79□□□□□ -1
VPS53-220ENST00000576149 ATXN7L3Q14CW9 347 aaPredicted RBP8.79□□□□□ -1
VPS53-220ENST00000576149 CLEC18BQ6UXF7 455 aa8.79□□□□□ -1
VPS53-220ENST00000576149 OVCH2Q7RTZ1 564 aa8.79□□□□□ -1
VPS53-220ENST00000576149 TMEM105Q8N8V8 129 aa8.79□□□□□ -1
VPS53-220ENST00000576149 ZBTB44Q8NCP5 570 aa8.79□□□□□ -1
VPS53-220ENST00000576149 OR5AP2Q8NGF4 316 aa8.79□□□□□ -1
VPS53-220ENST00000576149 Q96M66 194 aa8.79□□□□□ -1
VPS53-220ENST00000576149 NMES1Q9C002 83 aa8.79□□□□□ -1
VPS53-220ENST00000576149 STRADBQ9C0K7 418 aa8.79□□□□□ -1
VPS53-220ENST00000576149 MBD2Q9UBB5 411 aa8.79□□□□□ -1
VPS53-220ENST00000576149 SHPKQ9UHJ6 478 aa8.79□□□□□ -1
VPS53-220ENST00000576149 SESN1Q9Y6P5 492 aa8.79□□□□□ -1
VPS53-220ENST00000576149 PCSK5Q92824 1860 aa8.78□□□□□ -1
VPS53-220ENST00000576149 C13orf42A0A1B0GVH6 325 aa8.78□□□□□ -1
VPS53-220ENST00000576149 A8MXK9 166 aa8.78□□□□□ -1
VPS53-220ENST00000576149 B8ZZF3 427 aa8.78□□□□□ -1
VPS53-220ENST00000576149 CYTIPO60759 359 aa8.78□□□□□ -1
VPS53-220ENST00000576149 LCATP04180 440 aa8.78□□□□□ -1
VPS53-220ENST00000576149 FGF2P09038 288 aa8.78□□□□□ -1
VPS53-220ENST00000576149 PATE4P0C8F1 98 aa8.78□□□□□ -1
VPS53-220ENST00000576149 TMEM225BP0DP42 221 aa8.78□□□□□ -1
VPS53-220ENST00000576149 CNR1P21554 472 aa8.78□□□□□ -1
VPS53-220ENST00000576149 GDF1P27539 372 aa8.78□□□□□ -1
VPS53-220ENST00000576149 PSMB6P28072 239 aa8.78□□□□□ -1
VPS53-220ENST00000576149 GFRA1P56159 465 aa8.78□□□□□ -1
VPS53-220ENST00000576149 SUPT4H1P63272 117 aaKnown RBP8.78□□□□□ -1
VPS53-220ENST00000576149 CYCSP99999 105 aaKnown RBP8.78□□□□□ -1
VPS53-220ENST00000576149 PSG4Q00888 419 aa8.78□□□□□ -1
VPS53-220ENST00000576149 KRTCAP3Q53RY4 240 aa8.78□□□□□ -1
VPS53-220ENST00000576149 BEX5Q5H9J7 111 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms