RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 MAGEL2Q9UJ55 1249 aa5.55□□□□□ -1.52
VPS53-213ENST00000572334 SAMD4AQ9UPU9 718 aaKnown RBP5.55□□□□□ -1.52
VPS53-213ENST00000572334 TET2Q6N021 2002 aaPredicted RBP5.55□□□□□ -1.52
VPS53-213ENST00000572334 IGHV3OR15-7A0A075B7D8 119 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 CLPSL1A2RUU4 121 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 CCDC182A6NF36 153 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 EFCAB10A6NFE3 127 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 OOEPA6NGQ2 149 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 P2RY10O00398 339 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 ARPC2O15144 300 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 ADAM20O43506 726 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 OR10H3O60404 316 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 GMDSO60547 372 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 TOX4O94842 621 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 GYPAP02724 150 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 CLUP10909 449 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 SLC2A1P11166 492 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 IRF2P14316 349 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 CRHBPP24387 322 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 NOS3P29474 1203 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 ETV6P41212 452 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 NPY4RP50391 375 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 RAG2P55895 527 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 DLX1P56177 255 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 PROK1P58294 105 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 BPIFB3P59826 476 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 ADARB1P78563 741 aaKnown RBP5.54□□□□□ -1.52
VPS53-213ENST00000572334 MS4A2Q01362 244 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 POU4F2Q12837 409 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 OR8G1Q15617 311 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 YIF1BQ5BJH7 314 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 LINC01590Q5TEZ4 76 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 GPR157Q5UAW9 335 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 TEX36Q5VZQ5 186 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 OLFML2AQ68BL7 652 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 ASPHD2Q6ICH7 369 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 NLRC3Q7RTR2 1065 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 MRPL21Q7Z2W9 205 aaKnown RBP5.54□□□□□ -1.52
VPS53-213ENST00000572334 DCXRQ7Z4W1 244 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 LDLRAD3Q86YD5 345 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 TCTE3Q8IZS6 198 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 TMEM86BQ8N661 226 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 ZNF511Q8NB15 262 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 PLPP7Q8NBV4 271 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 SLC37A3Q8NCC5 494 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 LY6G5BQ8NDX9 201 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 OR5T2Q8NGG2 359 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 OR56B2PQ8NGI1 322 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 OR4C15Q8NGM1 316 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 OR11L1Q8NGX0 322 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 OR2AJ1Q8NGZ0 328 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 OR4Q3Q8NH05 313 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 ENKURQ8TC29 256 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 ZFAND1Q8TCF1 268 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 GNPDA2Q8TDQ7 276 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 SPRYD4Q8WW59 207 aaPredicted RBP5.54□□□□□ -1.52
VPS53-213ENST00000572334 RPL3LQ92901 407 aaKnown RBP5.54□□□□□ -1.52
VPS53-213ENST00000572334 SEH1LQ96EE3 360 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 PCGF1Q9BSM1 259 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 ADAT1Q9BUB4 502 aaKnown RBP5.54□□□□□ -1.52
VPS53-213ENST00000572334 C6orf62Q9GZU0 229 aaPredicted RBP5.54□□□□□ -1.52
VPS53-213ENST00000572334 FGF23Q9GZV9 251 aaPredicted RBP5.54□□□□□ -1.52
VPS53-213ENST00000572334 SLC22A4Q9H015 551 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 IFT22Q9H7X7 185 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 FN3KRPQ9HA64 309 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 IL1RAPQ9NPH3 570 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 NOX4Q9NPH5 578 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 ABCB10Q9NRK6 738 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 C1orf123Q9NWV4 160 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 VNN3Q9NY84 501 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 MRPL15Q9P015 296 aaKnown RBP5.54□□□□□ -1.52
VPS53-213ENST00000572334 ZNF319Q9P2F9 582 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 KAAG1Q9UBP8 84 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 KCNG2Q9UJ96 466 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 LYVE1Q9Y5Y7 322 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 CDH10Q9Y6N8 788 aa5.54□□□□□ -1.52
VPS53-213ENST00000572334 IGHV1-69DA0A0B4J2H0 117 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 A0A0U1RQK1 487 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 A0A1B0GUS0 222 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 MEGF11A6BM72 1044 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 DVL1O14640 695 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 TIPRLO75663 272 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 KNG1P01042 644 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 GASTP01350 101 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 IFNA7P01567 189 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 IGHV1-69P01742 117 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 IGHV4-59P01825 116 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 HLA-DQA2P01906 255 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 GYPBP06028 91 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 LIPFP07098 398 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 GRPP07492 148 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 HLA-DMAP28067 261 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 RCVRNP35243 200 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 MAGEA2P43356 314 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 SLC15A1P46059 708 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 IER3P46695 156 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 PRKXP51817 358 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 SMIM11AP58511 58 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 ARF6P62330 175 aa5.53□□□□□ -1.52
VPS53-213ENST00000572334 FAM3AP98173 230 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms