RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 RIPPLY1Q0D2K3 151 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 WDR82Q6UXN9 313 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 C1orf229Q6ZS94 237 aaPredicted RBP11.56□□□□□ -0.56
CLN3-235ENST00000568497 ANGPTL5Q86XS5 388 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 SCCPDHQ8NBX0 429 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 CSNK2A3Q8NEV1 391 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 OR11L1Q8NGX0 322 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 GATAD2BQ8WXI9 593 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 DUX5Q96PT3 197 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 MICU1Q9BPX6 476 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 RGCCQ9H4X1 137 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 OPA3Q9H6K4 179 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 FGF20Q9NP95 211 aaPredicted RBP11.56□□□□□ -0.56
CLN3-235ENST00000568497 RNF7Q9UBF6 113 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 CTSZQ9UBR2 303 aa11.56□□□□□ -0.56
CLN3-235ENST00000568497 TRAV20A0A0B4J274 112 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.55□□□□□ -0.56
CLN3-235ENST00000568497 FAM230AA0A1W2PPH8 454 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 ACOD1A6NK06 481 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 OR4C45A6NMZ5 311 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 TRAPPC2LH3BP13 241 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 FADS2O95864 444 aaKnown RBP11.55□□□□□ -0.56
CLN3-235ENST00000568497 IRF2P14316 349 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 CFL1P23528 166 aaKnown RBP11.55□□□□□ -0.56
CLN3-235ENST00000568497 GATA4P43694 442 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 CEBPDP49716 269 aaPredicted RBP11.55□□□□□ -0.56
CLN3-235ENST00000568497 RAB40BQ12829 278 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 ALKBH1Q13686 389 aaKnown RBP11.55□□□□□ -0.56
CLN3-235ENST00000568497 UBE2V2Q15819 145 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 HAGHLQ6PII5 290 aaPredicted RBP11.55□□□□□ -0.56
CLN3-235ENST00000568497 PLPP7Q8NBV4 271 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 RGP1Q92546 391 aaPredicted RBP11.55□□□□□ -0.56
CLN3-235ENST00000568497 RFT1Q96AA3 541 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 FGGYQ96C11 551 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 SPACA5Q96QH8 159 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 CCL13Q99616 98 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 SMURF1Q9HCE7 757 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 MRPS18AQ9NVS2 196 aaKnown RBP11.55□□□□□ -0.56
CLN3-235ENST00000568497 PAK1IP1Q9NWT1 392 aaPredicted RBP11.55□□□□□ -0.56
CLN3-235ENST00000568497 ENPP5Q9UJA9 477 aa11.55□□□□□ -0.56
CLN3-235ENST00000568497 RRP15Q9Y3B9 282 aaKnown RBP11.55□□□□□ -0.56
CLN3-235ENST00000568497 IGKV1-27A0A075B6S5 117 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 IGHV3OR16-10A0A075B7F0 116 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 ANXA2P2A6NMY6 339 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 SNTNA6NMZ2 147 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 PTGES3LE9PB15 166 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 H0YAE9 185 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 PTBP3O95758 552 aaKnown RBP11.54□□□□□ -0.56
CLN3-235ENST00000568497 NRASP01111 189 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 RPS2P15880 293 aaKnown RBP11.54□□□□□ -0.56
CLN3-235ENST00000568497 AMY2BP19961 511 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 FPR2P25090 351 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 MDH2P40926 338 aaKnown RBP11.54□□□□□ -0.56
CLN3-235ENST00000568497 SOX2P48431 317 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 IL13RA1P78552 427 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 SLC3A1Q07837 685 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 ST3GAL4Q11206 333 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 DOK3Q7L591 496 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 C1QL2Q7Z5L3 287 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 FAM90A1Q86YD7 464 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 C1QL4Q86Z23 238 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 SETD9Q8NE22 299 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 NANPQ8TBE9 248 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 Q8TCH9 128 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 FBLIM1Q8WUP2 373 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 CNBD2Q96M20 576 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 RTL8AQ9BWD3 113 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 SLC22A4Q9H015 551 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 MOB1AQ9H8S9 216 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 PATZ1Q9HBE1 687 aaKnown RBP11.54□□□□□ -0.56
CLN3-235ENST00000568497 SOX21Q9Y651 276 aaPredicted RBP11.54□□□□□ -0.56
CLN3-235ENST00000568497 DOCK11Q5JSL3 2073 aa11.54□□□□□ -0.56
CLN3-235ENST00000568497 KMT2CQ8NEZ4 4911 aaKnown RBP11.54□□□□□ -0.56
CLN3-235ENST00000568497 IGKV1-9A0A0C4DH69 117 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 LRRC30A6NM36 301 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 POM121CA8CG34 1229 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 F5H0A9 414 aaPredicted RBP11.53□□□□□ -0.56
CLN3-235ENST00000568497 F8VVB4 439 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 F8VWA3 439 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 LGALS8O00214 317 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 ADAM20O43506 726 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 ZFPL1O95159 310 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 WNT2P09544 360 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 CCL1P22362 96 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 DLX1P56177 255 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 ZNF404Q494X3 552 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 KLHL22Q53GT1 634 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 FBLN7Q53RD9 439 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 CALHM1Q8IU99 346 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 FAM216BQ8N7L0 139 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 ZNF676Q8N7Q3 588 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 TMEM80Q96HE8 168 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 HIST1H2AAQ96QV6 131 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 SLITRK2Q9H156 845 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 VCXQ9H320 206 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 OR51I2Q9H344 312 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 ELL3Q9HB65 397 aaPredicted RBP11.53□□□□□ -0.56
CLN3-235ENST00000568497 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.53□□□□□ -0.56
CLN3-235ENST00000568497 C8orf4Q9NR00 106 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 C14orf119Q9NWQ9 140 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms